Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03628 ATGTCTGGAAAAGAAGATAATCGAATCTTTGTTGGAGGATTGGGTTGGGACGTTACGGAACGTCAGCTGGAACATGCCTTTGATCGTTACGGCAAGATTCTCGAATGTCAGATCATGATGGAAAGGGATACAGGACGTCCTCGTGGATTTGGGTTCATTACATTTTCTGACCGTCGGGGAATGGAGGATGCAATTAAAGAAATGAATGGACGGGAAATTGGTGATCGAATCATCTCAGTCAACAAGGCACAGCCTAGGGCAGGGGGTGATGATGCAGACCAAGGGTACAGAGGTGGCTACTCTTCAGGTGGCAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGTCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGAGACGGTGGTCGTGGTCGTGGTCGTGGCAGTGGTTCATTTTCTTCCCGTCCTAGGTTTGGAGGTGCTGGTGGACACGGGGATCGCCTTGGTGAACGTGAGCGGTACATCGATGATCGTTATGATGGAGGACGTTACGGGGATAGGGACCGTTTAGACAGCCGAGACTACAAATATAGTGGCCGTGATCGCTATGCCAGTGACAGGTATGCAGTAAGTGGAGGAGATCGATTTGATCGATATGGAAGTGGCTCAGACTACCCGCAAAATGGTTATGGGAAAGAAAGAGGCTATGACCGCTATGGTGGTGCTCGTGGAGGTGCTGATAGAAATGGAAGTGGAATACCTGCTCGTGATGAAGGAAGAAGTTATAGGGGTAGGCCTGCTCCTTATGACCGCCCCAGCAGGGCTGCTCGGCCATCATCATTTGACCGTTACTGA 849 0.5124 MSGKEDNRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGMEDAIKEMNGREIGDRIISVNKAQPRAGGDDADQGYRGGYSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGRGSGSFSSRPRFGGAGGHGDRLGERERYIDDRYDGGRYGDRDRLDSRDYKYSGRDRYASDRYAVSGGDRFDRYGSGSDYPQNGYGKERGYDRYGGARGGADRNGSGIPARDEGRSYRGRPAPYDRPSRAARPSSFDRY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03628 282 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vifa3g03628 282 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Vifa3g03628 282 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Vifa3g03628 282 MobiDBLite consensus disorder prediction 162 211 - -
Vifa3g03628 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vifa3g03628 282 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 273 - -
Vifa3g03628 282 MobiDBLite consensus disorder prediction 83 110 - -
Vifa3g03628 282 Gene3D - 118 157 - -
Vifa3g03628 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vifa3g03628 282 Gene3D - 2 117 IPR012677 -
Vifa3g03628 282 MobiDBLite consensus disorder prediction 132 282 - -
Vifa3g03628 282 FunFam glycine-rich RNA-binding protein RZ1C 1 114 - -
Vifa3g03628 282 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Vifa3g03628 282 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Vifa3g03628 282 SUPERFAMILY Retrovirus zinc finger-like domains 103 137 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03628 Vifa-Chr3 1057269772 1057273790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03628 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 3.85e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03628 - - gmx:100776333 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03628 3 1057269772 1057273790 Vifa3g03628 3 1057269772 1057273790 ECH