Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03621 ATGCAAAGGTTCAACACAACAAGTGAATCACCCTCCTCACCAGTCTATTCTCATTCTTCATTCTTGTTGAGGGGTGATGAATCAAATCTTAATCCAACACGTTTCTTTGATCCTCAACTTTCATTTCAACAACACTATGCTGTTGATTTAAGTTCTATGTTTGGTGCAAAGTCTAACAATGTTGCTGTTGCAGCAAGTAACTTGCAGTATGGAACATTCAACACAAATTTTGGTTCTGGTTCTTCTTCAGGCATGGGAGATAATACTCAAAAGACTGAAGATACTTCAACAGAAGATATTGATACTGATGATAAAAACAATCATTGTTTCTCTACTGTTTCTTGGTGCAATGGTGTTGAGAATGAGGCTCTTGTGGTTGTTGATTCCAAGGATCAATGTAAGACTAAGGATAAATCTGAAGAGCAGAAGAATCTTCGTAGGCTGGTTCAGAATCGCGAGGCTGCGAGGAAAAGTCGATTAAGGAAAAAGGCATACGTGCAACAATTGGAGAACAGTAGACTTAAGCTTGCTCAAATAGAGCAAGAGCTTCAACAAGTTCATCAGCAGGGTGTATTTGGTGCAACCGGAGTTACAGCGGATCATGGTCATTCAGCTGTCGGAAGCAGTAATTCAGGCGCGTTAGCGTTTGATATGGACTATGCCCGTTGGGTCGATGAGCATCAACGACTAATCGATGGCATAAGATCGGCTATAAATTCCCAAATGGGCGATAGTGAACTTCATCTTCTTGTTGATGGTGTCATTACACATTATGATGAGTTATACCGATTGAAGTGCATAGGTGTGAAAGCCGATGTATTTCACATACTTTCTGGTTTGTGGATAACACCTGCAGAAAGATGCTTCATGTGGCTCGGTGGATACCGTCCCTCCGAACTTCTCATGATTGTTAGAAACCATCTCGATCCGTTGATGGATCAGCAGTTGATGGGGATATACAATCTGCAGCATTCTTCTCAACAAGCCGAGGATGCATTATCACAAGGCATGGAAGCATTGCAACAATCTCTTTCCGAAACGCTTTCTTCAACCACCAACGGATCTGGAAATGTCGCCGAGTATATGGGCCAAATGGCCATTGCAATGGCCAAGCTAGCCACACTAGAGACTTTCATTCATCAGGCTGATCTCTTGAGGCAACAAACACTCCAACAGTTGCGTCGAATTTTGACCACACATCAAGCTGCTCGTGCTCTCGTCGTTCTAAATGACTACATTTTGCGAATTCGAGCACTGAATTCATTATGGTTAGCATGTCCTAAAGAATAG 1290 0.4225 MQRFNTTSESPSSPVYSHSSFLLRGDESNLNPTRFFDPQLSFQQHYAVDLSSMFGAKSNNVAVAASNLQYGTFNTNFGSGSSSGMGDNTQKTEDTSTEDIDTDDKNNHCFSTVSWCNGVENEALVVVDSKDQCKTKDKSEEQKNLRRLVQNREAARKSRLRKKAYVQQLENSRLKLAQIEQELQQVHQQGVFGATGVTADHGHSAVGSSNSGALAFDMDYARWVDEHQRLIDGIRSAINSQMGDSELHLLVDGVITHYDELYRLKCIGVKADVFHILSGLWITPAERCFMWLGGYRPSELLMIVRNHLDPLMDQQLMGIYNLQHSSQQAEDALSQGMEALQQSLSETLSSTTNGSGNVAEYMGQMAIAMAKLATLETFIHQADLLRQQTLQQLRRILTTHQAARALVVLNDYILRIRALNSLWLACPKE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03621 429 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 146 161 IPR004827 GO:0003700|GO:0006355
Vifa3g03621 429 Gene3D - 143 190 - -
Vifa3g03621 429 Pfam bZIP transcription factor 140 173 IPR004827 GO:0003700|GO:0006355
Vifa3g03621 429 SUPERFAMILY Leucine zipper domain 143 187 IPR046347 GO:0003700|GO:0006355
Vifa3g03621 429 ProSiteProfiles DOG1 domain profile. 213 426 IPR025422 GO:0006351|GO:0043565
Vifa3g03621 429 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 185 IPR004827 GO:0003700|GO:0006355
Vifa3g03621 429 MobiDBLite consensus disorder prediction 78 100 - -
Vifa3g03621 429 FunFam BZIP family transcription factor 142 191 - -
Vifa3g03621 429 Pfam Seed dormancy control 233 305 IPR025422 GO:0006351|GO:0043565
Vifa3g03621 429 Coils Coil 162 189 - -
Vifa3g03621 429 Coils Coil 138 158 - -
Vifa3g03621 429 PANTHER TRANSCRIPTION FACTOR TGA9 80 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03621 Vifa-Chr3 1055363031 1055366272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03621 11 429 bZIP Transcription Factor Family AT1G68640 51.173 8.44e-139 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g03621 DOG1 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03621 K14431 - gmx:100775783 526.554