Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03616 ATGGGTCTCCTTCAACTCACAAAAAAATCAATCTTTTTCACTCTTGCAATACTCATTCCAATTATTACTACAAAACTCTTATCTCCATCCATTGCTTGTGTCTCACTCATACTCTCATTAATATTATACATATACTCAACTCATTCCAATTCAGACCACAAAAATCCTCCATCTCCTTTTTCTGTTCCTATATTTGGAAACTGGCTCCAAGTTGGAAATGATCTCAACCATCGTATTCTTGCATCCATGTCACAAACTTATGGACCACTTTTCCTCCTCAAACTTGGTTCCAAAAACCTAGTTGTTGTCTCTGATCCAAACCTTGCCACACAAGTTCTTCATTCACAAGGCGTCGAATTCGGTTCTCGTCCTCGTAACGTTGTCTTCGACATCTTCACTGGTAATGGACAAGACATGGTTTTCACTGTCTACGGTGATCACTGGCGCAAAATGCGAAGAATCATGACATTGCCTTTTTTCACTAACAAAGTTGTTCATAATTATAGTAACATGTGGGAACAAGAAATGGATTTGGTAGTGCAAGATCTTAAGGCTAATGAGATTGTTGGAAGTGAAGGGATTGTTATCAGAAAACGTCTTCAGTTGATGTTGTATAATATCATGTATAGAATGATGTTTGATTCCAAATTTGAGTCTCAAGAAGATCCTTTGTTTATTCAAGCTACAAGGTTTAACTCTGAGAGAAGCCGTTTGGCACAGAGTTTTGAATACAATTATGGAGATTTTATACCTTTGCTTAGGCCTTTCTTGAGAGGCTACCTTAACAAATGCAAAGATTTGCAAACTAGAAGGCTTGCATTTTTCAACAACTACTTCATTGAGAAGAGAAGAAAAATAATGGCAGAAAATGGGGAGAAGCATGAGATAAATTGTGCAATTGATCACATAATAGATGCTGAAATGAAAGGTGAAATAAGTGAAGAAAATGTGACATACATAGTAGAAAACATAAACGTTGCTGCAATAGAAACAACACTATGGTCAATGGAATGGGCAATAGCAGAGTTAGTGAATCATCCAAAAGTCCAAACAAAAATACGCGACGAGATATCAAAAGTGCTTAAAGATGAACAAGTCACAGAATCAAACCTAAACCAGTTAGCATATTTACAAGCAACATTGAAAGAGGTACTAAGATTGCATACACCAATTCCATTGTTAGTGCCACACATGAACCTTGAAGAGGCTAAGCTAGGAGAGTGCACAATTCCAAAAGAGAGTAAAGTAGTTGTGAATGCTTGGTGGCTTGCAAATAATCCACTATGGTGGGAGAAGCCTGAGGAGTTTAGGCCAGAGAGGTTTTTGGAAGAGGAGAATGGAACTGATGCTGTGGCTGGTGGAGGGAAAGTTGATTTTAGATTTGTGCCATTTGGTGTTGGGAGAAGAAGTTGTCCTGGGATTATACTTGCATTGCCAATATTGGGATTGGTTATTGCTAAGTTGGTGTCAAATTTTGAGATGAAGGGTTTGAATGGGATGAAGATTGATGTTAGTGAAAAAGGTGGACAATTTAGTCTGCATATTGCTAATCATTCCACTGTTTTGTTCCATCCAATTCATTAG 1584 0.3769 MGLLQLTKKSIFFTLAILIPIITTKLLSPSIACVSLILSLILYIYSTHSNSDHKNPPSPFSVPIFGNWLQVGNDLNHRILASMSQTYGPLFLLKLGSKNLVVVSDPNLATQVLHSQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSNMWEQEMDLVVQDLKANEIVGSEGIVIRKRLQLMLYNIMYRMMFDSKFESQEDPLFIQATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQTRRLAFFNNYFIEKRRKIMAENGEKHEINCAIDHIIDAEMKGEISEENVTYIVENINVAAIETTLWSMEWAIAELVNHPKVQTKIRDEISKVLKDEQVTESNLNQLAYLQATLKEVLRLHTPIPLLVPHMNLEEAKLGECTIPKESKVVVNAWWLANNPLWWEKPEEFRPERFLEEENGTDAVAGGGKVDFRFVPFGVGRRSCPGIILALPILGLVIAKLVSNFEMKGLNGMKIDVSEKGGQFSLHIANHSTVLFHPIH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03616 527 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 84 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS E-class P450 group I signature 108 129 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 Gene3D Cytochrome P450 41 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 Pfam Cytochrome P450 56 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 SUPERFAMILY Cytochrome P450 56 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Vifa3g03616 527 FunFam Trans-cinnamate 4-monooxygenase 45 520 - -
Vifa3g03616 527 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03616 527 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 36 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03616 Vifa-Chr3 1053182493 1053184273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03616 65 525 Monolignol Biosynthesis Gene Families AT2G30490 64.655 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03616 K00487 - gmx:100812188 833.558