Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03608 ATGGGGATATATCTAAGTGCTCCAAAAATTGAGAAGGCCTCCGAAGATGGTGAGAATGGCATGCTTCGCTTCGGTTTGTCTTTAATGCAGGGCTGGCGTGCTTCTATGGAAGATGCACATGCAACTCATCCATATTTGGACGAGTCTAAGTCTTACTTTGGTGTTTATGATGGCCATGGAGGTAAAGCTGTTTCAAAATTCTGTGCCAAGTTTCTACACCAGCAGAGGGGTTTATATGGTCTCCCAAGAGTAGTGAAGCCAATGACCGTGCCGATGAGTGGGCTTTTGAGGAGGGACCCCATTCCGATTTCGGTGGGCCAAAACTCTGGAAGCACAACTTGTGTGGCTGTCATCCGAGGAAACAAACTTGTTGTTGCAAATGCTGGTGATTCTAGATGTGTGTTATCAAGGAAAGGCCAGGCACACAACTTGTCTAAGGATCACAAGCCTGACCTTGAACTTGAGAAAAACACTACGGATTTGGGTTTACCGCTATATGATGGTGGCGATGCAGCTGATCTTTTTTATGATTGTGTTTTTGCTGATGTAGCTAAAGAAAAAGGTGCAGTGGAATTAGAGAAAGGAGAGCCAGCAAAACTTTTGAAAGATGTCTTAGAGAAAATGGCAGAGCAACTTGAGTTGAATCCAGTATATCAGGACTTTGCTTGA 669 0.4425 MGIYLSAPKIEKASEDGENGMLRFGLSLMQGWRASMEDAHATHPYLDESKSYFGVYDGHGGKAVSKFCAKFLHQQRGLYGLPRVVKPMTVPMSGLLRRDPIPISVGQNSGSTTCVAVIRGNKLVVANAGDSRCVLSRKGQAHNLSKDHKPDLELEKNTTDLGLPLYDGGDAADLFYDCVFADVAKEKGAVELEKGEPAKLLKDVLEKMAEQLELNPVYQDFA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03608 222 SMART PP2C_4 13 218 IPR001932 -
Vifa3g03608 222 PANTHER PROTEIN PHOSPHATASE 2C 27 157 IPR015655 GO:0004722|GO:0006470
Vifa3g03608 222 SUPERFAMILY PP2C-like 3 157 IPR036457 -
Vifa3g03608 222 CDD PP2Cc 23 157 IPR001932 -
Vifa3g03608 222 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vifa3g03608 222 Gene3D - 1 160 IPR036457 -
Vifa3g03608 222 ProSiteProfiles PPM-type phosphatase domain profile. 23 222 IPR001932 -
Vifa3g03608 222 Pfam Protein phosphatase 2C 24 156 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03608 Vifa-Chr3 1049616252 1049617071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03608 1 156 PP2C-type Phosphatase Gene Family AT4G31860 49.029 3.02e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03608 K17499 - gmx:100776787 213.772