Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03603 ATGAAGGTTTTCGTGAAGACTCTCAAAGGAACTCACTTCGAAATCGAAGTGACGCCACAAGACTCGATTTCTGATGTGAAGAAAAATATAGAAACTGTTCAAGGTGTAGATGTCTATCCTGCTGCGCAGCAAATGCTTATTCATCAAGGGAAAGTTTTGAAGGATGGCTCCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCCTTGTCATTATGCTTTCAAAGAGTAAGACTAAATCTGGCGAAGGGTCTACTGCTTCAAATGCTCCTCCAGCAAAGGCCCCACAGACAAGTTCTGCTCCTACTTCAACCCCCACAGTGTCTGTATCACCTCAAGCTCCCGCCGCAGTTGCCACACAGCCTGCATCTGTTGCTGCACCTTCTCCAGCTCCAGCTCCTACTCCTGCTCCTACTCCTTCAGCAACTGCTACGGAAGGTTCTGATGTCTATGGGCAGGCAGCATCCAATTTGGTTGCTGGTAGCAACTTGGAGGAAACAGTTCAGCAAATCCTAGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTATTCGTGCTCTTCGAGCTGCCTTCAACAATCCCGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCCGAACAAGCTGAAGCTCCAGCAGCATCCCAAGTGCCTGCAATTGCGCAGCCTGCGAGTCCTGCAGCTGCAGCTACACAAGCAGCACAGCCTGCTCCTGTTACATCAAGTGGACCTAATGCTAATCCTCTCGACCTCTTTCCCCAGGGCCTCCCAAATATTGGTGCTGGTGCTGCTGGTGCTGGCTCTCTGGATTTTCTACGCAACAGTCAGCAATTTCAAGCTCTGCGAGCTATGGTGCAAGCAAACCCACAAATATTGCAGCCCATGCTACAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAGGCTGACTTTCTTCGCCTGATTAACGAACCCATGGAAGGTGGCGAAGGGAACCTATTGGGACAAATGGCTGGTGGCATGCCACAAGCAGTAACAGTCACACCCGAGGAGCGGCAAGCTATTGAACGGCTTGAAGCAATGGGTTTCGACCGTGCTATAGTATTGGAGGTGTACTTTGCTTGTAACAAGAATGAGGAATTGGCGGCCAACTACCTTTTAGACCACATGCATGAGTTTGACGAACAATGA 1191 0.4828 MKVFVKTLKGTHFEIEVTPQDSISDVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGSTLEENKVAENSFLVIMLSKSKTKSGEGSTASNAPPAKAPQTSSAPTSTPTVSVSPQAPAAVATQPASVAAPSPAPAPTPAPTPSATATEGSDVYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPAASQVPAIAQPASPAAAATQAAQPAPVTSSGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGGEGNLLGQMAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03603 396 SMART CBM 268 311 IPR006636 -
Vifa3g03603 396 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vifa3g03603 396 SMART ubq_7 1 75 IPR000626 GO:0005515
Vifa3g03603 396 SUPERFAMILY XPC-binding domain 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vifa3g03603 396 Gene3D - 343 390 - -
Vifa3g03603 396 FunFam UV excision repair protein RAD23 1 80 - -
Vifa3g03603 396 CDD UBA1_Rad23_plant 158 207 - -
Vifa3g03603 396 FunFam UV excision repair protein RAD23 B 261 326 - -
Vifa3g03603 396 Pfam UBA/TS-N domain 351 386 IPR015940 -
Vifa3g03603 396 Pfam UBA/TS-N domain 164 202 IPR015940 -
Vifa3g03603 396 SUPERFAMILY UBA-like 161 212 IPR009060 GO:0005515
Vifa3g03603 396 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Vifa3g03603 396 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Vifa3g03603 396 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Vifa3g03603 396 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Vifa3g03603 396 FunFam UV excision repair protein RAD23 homolog 342 390 - -
Vifa3g03603 396 SUPERFAMILY UBA-like 331 394 IPR009060 GO:0005515
Vifa3g03603 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - -
Vifa3g03603 396 SMART uba_6 351 388 IPR015940 -
Vifa3g03603 396 SMART uba_6 164 204 IPR015940 -
Vifa3g03603 396 CDD Ubl_Rad23 1 74 - -
Vifa3g03603 396 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Vifa3g03603 396 NCBIfam UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Vifa3g03603 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Vifa3g03603 396 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vifa3g03603 396 MobiDBLite consensus disorder prediction 228 248 - -
Vifa3g03603 396 MobiDBLite consensus disorder prediction 80 118 - -
Vifa3g03603 396 FunFam UV excision repair protein RAD23 homolog 157 207 - -
Vifa3g03603 396 MobiDBLite consensus disorder prediction 80 147 - -
Vifa3g03603 396 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vifa3g03603 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
Vifa3g03603 396 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vifa3g03603 396 Gene3D - 1 80 - -
Vifa3g03603 396 Gene3D - 157 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03603 Vifa-Chr3 1048464995 1048469563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03603 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 5.78e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03603 K10839 - gmx:100814162 557.37