Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03595 ATGAAATTGAGCTGCAATGGTTGTCGTGCTCTTCGCAAAGGTTGTAGTGAAGACTGCATCATCAAGCCTTGCCTTGAGTGGATCAATTCCCCTGAATCTCAAGGCAATGCCACCCTTTTCCTTGCCAAATTCTTTGGCCGAACCGGCTTGCTCAACCTCCTCGCCAATGGTTCTAATCAAAACGCATCAGCTGTTTTTAGATCACTATTGTACGAGGCTTCAGGTAGATTGGTGAATCCAACATATGGAGCACTTGGTTTATTATGGACAGGAGAATGGAGCCGATGTGAAGCTGCAGTTGAAGCTGTGCTAACTGGCTCCGACATTAACAAAGTTATAGATGTTGATGAAAAAACATCATTGACTACACTCATGAAAGAAAATCATGTTCTTCCAGTTCCAACAACCTACGACATACGCCATGCAGCAAAAGGCACAAATATGGACATCAAAGAGAAAACTCAATTTAAGAGAATTGGACAAATTTTCAAACCCAAGCCACGAAGTGGTTCTGTCAACTCAGGAACACTTTTGAATTCGTTCTTAGAAAATACTATGAACGCTTCATCGATGAATCAGCTTGAGCCGAATGAAGCAGATCAGGTGAACTTAGAGCTCAGTCTCGGTTTCAATACCAAATCAACTCAAACAAAGGGAAAAAATTAA 666 0.4159 MKLSCNGCRALRKGCSEDCIIKPCLEWINSPESQGNATLFLAKFFGRTGLLNLLANGSNQNASAVFRSLLYEASGRLVNPTYGALGLLWTGEWSRCEAAVEAVLTGSDINKVIDVDEKTSLTTLMKENHVLPVPTTYDIRHAAKGTNMDIKEKTQFKRIGQIFKPKPRSGSVNSGTLLNSFLENTMNASSMNQLEPNEADQVNLELSLGFNTKSTQTKGKN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03595 221 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vifa3g03595 221 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
Vifa3g03595 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03595 Vifa-Chr3 1040866868 1040867885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03595 1 144 AS2 family AT1G68510 55.556 2.90e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa3g03595 LOB 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03595 - - mtr:25485496 290.041