Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03590 ATGTCTCAAACTGAAAGTCTCACAAATTTTCTTAAAAGCTTTAGTTTCATTTTATCTTCCTTTCTCAAACAAACTGGTGTTTCTTTCTTTTGTTTATCTATCTCATACTATTATCATTTCATTTTTCACCTCTTTCTGTCTCTCTTTCTCTCTGTCGGTACCATCATCATGAGACCACAAGGAAACCCTTTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAACTCCTTGAAGACACCGATCCACCCGGTTGTAGGAAAAAGAAAAACGGCGGGAAGGATGGGAAAGAAGATTGTGGGAAGGTGTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAATCTCAGGCTCTTGGGGGGCACATGAACCGTCACCGACAAGAAAGAGAAACAGAGACACTTAACCATGCTCGTCAGTTAGTCTTCAGAAATGATCATAACATTGCACCACAACCTCCATCTCACCTTGTAGGATGTTGTCCACCACCAATGGCAACAAGTGGTTATATTCCAGCAAATACCATGGGAGTTGATCCAACAATGGCGCCGAGATTTCCGAGATACTTTTCGGGTTCATCGTCTTCAACTCACGTTCCACCGCCACCTCCACCGCCGCCACCAGCACAGCCATTTCTATACTCTTCGCCTTCACGGCCGGTATCATTTCCAACGCACATGATTCCTCATCATCCAATGAACGAATACCACGTCGGGCACGTGATGAGCAGCAGCCACAGCCATCACCAGCAGCAGTATGGTGGACATGGACAACACAACTTTGGTGGAGGCGAGTCGAATTACACGTGCATAGGTGCACCGGTTGGACAAGGTTTTGTTGGTGGTAATGGTAATGGTAACGGTAATGGCGGTGGTGGTGGTGGGAAGGATCATCATCAAGAGGAAGGAGGAGGAGCGATAAACTGGGGAAGAAACTATTCAGGAACACAGCAGCATCGTTTGGATAGTCATTCAGCAGCGATCAATCGCTTTCAAGATGGTTTCTAA 1020 0.452 MSQTESLTNFLKSFSFILSSFLKQTGVSFFCLSISYYYHFIFHLFLSLFLSVGTIIMRPQGNPLDLNNLPDEYSRDHGKQLLEDTDPPGCRKKKNGGKDGKEDCGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNIAPQPPSHLVGCCPPPMATSGYIPANTMGVDPTMAPRFPRYFSGSSSSTHVPPPPPPPPPAQPFLYSSPSRPVSFPTHMIPHHPMNEYHVGHVMSSSHSHHQQQYGGHGQHNFGGGESNYTCIGAPVGQGFVGGNGNGNGNGGGGGGKDHHQEEGGGAINWGRNYSGTQQHRLDSHSAAINRFQDGF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03590 339 Gene3D Classic Zinc Finger 91 158 - -
Vifa3g03590 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Vifa3g03590 339 MobiDBLite consensus disorder prediction 78 102 - -
Vifa3g03590 339 MobiDBLite consensus disorder prediction 192 217 - -
Vifa3g03590 339 PANTHER ZINC FINGER PROTEIN JAGGED 88 293 IPR045320 GO:0003700
Vifa3g03590 339 FunFam Zinc finger protein STAMENLESS 1 85 156 - -
Vifa3g03590 339 MobiDBLite consensus disorder prediction 286 321 - -
Vifa3g03590 339 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Vifa3g03590 339 MobiDBLite consensus disorder prediction 201 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03590 Vifa-Chr3 1035209102 1035213928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03590 60 282 C2H2 Transcription Factor Family AT1G13400 40.435 1.46e-26 102