Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03577 ATGACCGCTTTCTTTCTCACCCTTATCTCTCTCTTTTTTCTTGTCATCACACTGAAGCTCTTGTTTTACACAACAAGATTCAAGAACCTTCCACCGGGTCCACCGTTTCTTCCAATAATTGGAAACCTTCATCAACTCAAAAAACCCATCCACCATACTTTCCAAACCTTATCACAAAAACATGGCCAAATCTTTTCTCTTTGGTTAGGTTCTCGTCTTGTCGTTGTTGTTTCTTCGTTAAAAACAGCACAAGAATTTTTTACCAAACATGACATCGTTTTAGCGAATCGACCTCAATTCTTATTCGGAAAATATATCAACTACAACTACACCACATTAATACAAGCATCATATGGTGACCATTGGCGCAATCTCCGTCGTATAATAACAACCGAGGTACTCTCATCTAATCGTTTAAATTCCTTCTTGGAAATACGAAGAGACGAGATAATGAGACTTATACAAAAGCTAGCAAGCGTTTCATATCATGATTTTTCAGAGGTGGAACTTGCGCCAATGTTTTCAGAATTGACATTCAACACAGTCATGAGAATGATGTCAGGGAAACGATATTATGGTGATGATTGTGATGTGAGTGATGTTGAGGAAGCAAGGTTGTTTAGAGAGATAATGAAAGAGATTCTGAGTTTAGGAGGAGCAACCAACATTAGTGATTTTTTAGGGTTTTTAAGGTGGTTTGATTTTGATGGTTTGGAGAAGAGTCTTAAGAGGATAAGTAAGAGAGCAGATTCATTTTTACAAAGACTAATTGATGAACATAGATTTGAAAAGAGGACCACTAATACTATGTTAGATCATCTCTTAAAACAACAACAGTCACAACCTGAATATTACACAGACCAAATCATCAAAGGACTTATCATGGTTATGCTTCTTGCAGGAACTGACACATCATCTATAACTTTAGAATGGGCTATGACCAATTTATTAAATAATCCAAATATATTAAAGAAGGCAAAAGATGAGTTGGACACTCACGTGGGACAAGACCACCTAGTAAATGAACATGATATTTCAAAACTTTCTTATCTTCAAAATATTGTTTATGAGACTCTCCGATTACATCCAGCTGCTCCACTATTATTGCCTCATTTTTCTTCAAAAGATTTTACAATAGAAAAATATAATATCCCACAAAACACAATTTTAATGGTCAATGCATGGGCCATTCATAGAGATCCAAATTTGTGGATTGATCCTATATGTTTTAAGCCCGAGAGATTTGAGAAAGAAGGTGAGACAAATAAACTACTTTCATTTGGAATGGGAAGAAGGGCTTGTCCTGGAGAAAATTTGGCTCATCGCACAATGAGTGTAACTTTAGGTTTATTGATTCAGTGTTTTGAGTGGAAACGTATAGGTAAAGATAAAATTGACATGGGCGAAAAAAAAGGAGTTACTTTGGAAAAAGAGATTTCCTTAAAAGCAATGTGCAAATTGCGTCATCCAATAAAGATTAAAAATGCTTTCTAA 1494 0.3541 MTAFFLTLISLFFLVITLKLLFYTTRFKNLPPGPPFLPIIGNLHQLKKPIHHTFQTLSQKHGQIFSLWLGSRLVVVVSSLKTAQEFFTKHDIVLANRPQFLFGKYINYNYTTLIQASYGDHWRNLRRIITTEVLSSNRLNSFLEIRRDEIMRLIQKLASVSYHDFSEVELAPMFSELTFNTVMRMMSGKRYYGDDCDVSDVEEARLFREIMKEILSLGGATNISDFLGFLRWFDFDGLEKSLKRISKRADSFLQRLIDEHRFEKRTTNTMLDHLLKQQQSQPEYYTDQIIKGLIMVMLLAGTDTSSITLEWAMTNLLNNPNILKKAKDELDTHVGQDHLVNEHDISKLSYLQNIVYETLRLHPAAPLLLPHFSSKDFTIEKYNIPQNTILMVNAWAIHRDPNLWIDPICFKPERFEKEGETNKLLSFGMGRRACPGENLAHRTMSVTLGLLIQCFEWKRIGKDKIDMGEKKGVTLEKEISLKAMCKLRHPIKIKNAF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03577 497 SUPERFAMILY Cytochrome P450 31 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Vifa3g03577 497 FunFam Cytochrome P450 family protein 22 491 - -
Vifa3g03577 497 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PANTHER CYTOCHROME P450 82C3-RELATED 11 490 - -
Vifa3g03577 497 CDD CYP81 62 481 - -
Vifa3g03577 497 Pfam Cytochrome P450 31 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03577 497 Gene3D Cytochrome P450 23 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03577 Vifa-Chr3 1031785946 1031787639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03577 4 488 Cytochrome P450 AT4G37330 55.738 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03577 K13260 - gmx:100811727 680.633