Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03575 ATGACCGCTTTCTTTCTCACCCTTATCTCTCTCTTTTTTCTTATCATCACACTGAAGCTCTTGTTTTACACAACAAGATTCAAGAACCTTCCACCGGGTCCACCGTTTCTTCCAATAATTGGAAACCTTCATCAACTCAAAAAACCCATCCACCACACTTTCCAAACCTTATCACAAAAACATGGCCAAATCTTTTCTCTTTGGTTAGGTTCTCGTCTCGTCGTTGTTGTTTCTTCGTTAAAAACAGCACAAGAATTTTTTACCAAACATGACATCATTTTAGCGAATCGACCTCAATTCTTATTCGGAAAATATATCAACTACAACTACACCACATTAATACAAGCATCATATGGTGACCATTGGCGCAATCTCCGTCGTATAATAACAACCGAGGTACTCTCATCTAATCGTTTAAATTCCTTCTTGGAAATACGAAGAGACGAGATAATGAGACTTATACAAAAGCTAGCAAGCGTTTCATATCATGATTTTTCAGAGGTGGAACTTGCGCCAATGTTTTCAGAATTGACATTCAACACAGTCATGAGAATGATGTCAGGGAAACGATATTATGGTGATGATTGTGATGTGAGTGATGTTGAGGAAGCAAGGTTGTTTAGAGAGATAATGAAAGAGATTCTGAGTTTAGGAGGAGCAACCAACATTAGTGATTTTTTAGGGTTTTTAAGGTGGTTTGATTTTGATGGTTTGGAGAAGAGTCTTAAGAGGATAAGTAAGAGAGCAGATTCATTTTTACAAAGACTAATTGATGAACATAGATTTGAAAAGAGGACCACTAATACTATGTTAGATCATCTCTTAAAACAACAACAGTCACAACCTGAATATTACACAGACCAAATCATCAAAGGACTTATCATGGTTATGCTTCTTGCAGGAACTGACACATCATCTATAACTTTAGAATGGGCTATGACCAATTTATTAAATAATCCAAATATATTAAAGAAGGCAAAAGATGAGTTGGACACTCACGTGGGACAAGACCACCTAGTAAATGAACATGATATTTCAAAACTTTCTTATCTTCAAAATATTGTTTATGAGAGTCTCCGATTACATCCAGCTGCTCCACTATTATTGCCTCATTTTTCTTCAAAAGATTTTACAATAGAAAAATATAATATCCCACAAAACACAATTTTAATGGTCAATGCATGGGCCATTCATAGAGATCCAAATTTGTGGATTGATCCTATATGTTTTAAGCCCGAGAGATTTGAGAAAGAAGGTGAGACAAATAAACTACTTTCATTTGGAATGGGAAGAAGGGCTTGTCCAGGAGAAAATTTGGCTCATCGCACAATGAGTGTAACTTTAGGAGTTACTTTGGAAAAAGAGATTTCCTTAAAAGCAATGTGCAAATTGCGTCATCCAATGAAGATTAAAAATGCTTTCTAA 1425 0.3565 MTAFFLTLISLFFLIITLKLLFYTTRFKNLPPGPPFLPIIGNLHQLKKPIHHTFQTLSQKHGQIFSLWLGSRLVVVVSSLKTAQEFFTKHDIILANRPQFLFGKYINYNYTTLIQASYGDHWRNLRRIITTEVLSSNRLNSFLEIRRDEIMRLIQKLASVSYHDFSEVELAPMFSELTFNTVMRMMSGKRYYGDDCDVSDVEEARLFREIMKEILSLGGATNISDFLGFLRWFDFDGLEKSLKRISKRADSFLQRLIDEHRFEKRTTNTMLDHLLKQQQSQPEYYTDQIIKGLIMVMLLAGTDTSSITLEWAMTNLLNNPNILKKAKDELDTHVGQDHLVNEHDISKLSYLQNIVYESLRLHPAAPLLLPHFSSKDFTIEKYNIPQNTILMVNAWAIHRDPNLWIDPICFKPERFEKEGETNKLLSFGMGRRACPGENLAHRTMSVTLGVTLEKEISLKAMCKLRHPMKIKNAF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03575 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Vifa3g03575 474 SUPERFAMILY Cytochrome P450 31 451 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 Gene3D Cytochrome P450 24 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 Pfam Cytochrome P450 31 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 CDD CYP81 62 449 - -
Vifa3g03575 474 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 FunFam Cytochrome P450 family protein 22 464 - -
Vifa3g03575 474 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03575 474 PANTHER CYTOCHROME P450 82C3-RELATED 11 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03575 Vifa-Chr3 1031692279 1031693972 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03575 3 465 Cytochrome P450 AT4G37370 51.025 2.57e-177 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03575 K13260 - gmx:100811727 627.091