LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g03564	ATGTCCACAACAACAAAGAAAGATGAAGAAAATGAGCTGAGAAGAGGACCATGGACTCTAGAAGAAGATAGTTTACTAATACACTATATTGCTCGTCACGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTTAGATGGTTGAATTACTTGAAACCTGACATTAAAAGAGGGAATCTTACTCCTCAAGAACAGTTGTTGATCCTTGAACTTCATTCCAAGTGGGGTAATAGGTGGTCGAAAATTGCGCAACATCTACCGGGAAGAACAGATAACGAGATCAAGAACTATTGGCGAACAAGGGTGCAAAAACAAGCCCGCCAACTCAACATCGAATCCGGTAGCAAAAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTACTTCAAAAGATGGAACAGAACAACTCATCACCAATCTCTGATCATTCTTCCATGACAAACATAAACAATTTCGGAAACTCCATCGAAGCTTCAACTAGTAACTCAATCTCAACAAGCTTCAATCTTCCTTCTATATCTCCATCATCTCATCCTCAAAGAGGATTCATAGATTCTTCAATTGGAAATGTGTCAACCAGCTTCAATAATCCTTCTTTGGATTTCTTCCAATTTTCACAGCCACTTGAAGTTTCAGAAACCTCAAAAAGTGTTCCAAACATGTTTGAAAACAATGTTAATAATTGTCAAGTCCAACAAAATTTATATATTGATGATACAAATTATACTTATGGCTTGGAAAGTTTAAGCTTTGATCCATTGTCTTCAATGGAAAATTATGACTTTTCACAGTTTGATTTTCAAACTTCAGGGAATGGATGGATGCTAGACAACATGGGTAATACTACTTTTTGGAACATGGATGCTATGTGA	912	0.3717	MSTTTKKDEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSSPISDHSSMTNINNFGNSIEASTSNSISTSFNLPSISPSSHPQRGFIDSSIGNVSTSFNNPSLDFFQFSQPLEVSETSKSVPNMFENNVNNCQVQQNLYIDDTNYTYGLESLSFDPLSSMENYDFSQFDFQTSGNGWMLDNMGNTTFWNMDAM	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g03564	303	Gene3D	-	12	68	-	-
	Vifa3g03564	303	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Vifa3g03564	303	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	10	62	IPR017930	-
	Vifa3g03564	303	FunFam	MYB transcription factor	72	135	-	-
	Vifa3g03564	303	ProSitePatterns	Phosphoglycerate mutase family phosphohistidine signature.	30	39	IPR001345	GO:0003824
	Vifa3g03564	303	Gene3D	-	71	113	-	-
	Vifa3g03564	303	SUPERFAMILY	Homeodomain-like	13	109	IPR009057	-
	Vifa3g03564	303	CDD	SANT	72	111	IPR001005	-
	Vifa3g03564	303	SMART	sant	67	115	IPR001005	-
	Vifa3g03564	303	SMART	sant	14	64	IPR001005	-
	Vifa3g03564	303	ProSiteProfiles	Myb-like domain profile.	10	62	IPR001005	-
	Vifa3g03564	303	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	9	178	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g03564	303	Pfam	Myb-like DNA-binding domain	15	62	IPR001005	-
	Vifa3g03564	303	Pfam	Myb-like DNA-binding domain	68	111	IPR001005	-
	Vifa3g03564	303	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Vifa3g03564	303	CDD	SANT	17	62	IPR001005	-
	Vifa3g03564	303	FunFam	Myb transcription factor	15	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g03564	Vifa-Chr3	1025038837	1025040155	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g03564	10	278	MYB Transcription Factor Family	AT1G68320	51.748	4.83e-88	263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vifa3g03564		Myb_DNA-binding	3.1e-15	CL0123