Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03540 ATGGCGTCAACACTCTCTCTTCTCATTCTCCTTCTCACACTCTCCCATTCTCTCCTCATTGTTCAGTCTTCTCTAAACCCAGATTTCGAATCTCTCCTAGCTTTCAAAACAGCTTCAGACCCATCCAAAAAACTCACAACATGGAAAAATAACACAAACCCATGTTCTTGGACCGGCGTTTCGTGTGACAAAGACCGAGTCACACGACTCGTTCTCGAAAATCTTAACCTCCAAGGCTCCATTGAATCTTTAACCTCTCTAACTCAGCTCCGAGTTTTGAGTCTCAAGGGAAACCGTTTCTCCGGCCAAGTTCCAAATCTCTCAAACCTCACTTCACTGAAACTTCTCTTCCTCTCTCACAACCATTTCTCCGGCGAGTTTCCGGTAACTCTAACGTCGCTCTTCCGTCTATACCGTCTCGATCTGTCTTACAATAACTTCTCCGGCGAGATTCCGGTGACACTCAACCATTTACCTCACCTCCTCACTCTCCGTCTCGACAAGAATCAATTCTCTGGCCTCATTCCGGAACTAAACCTTCTCAGTTTACAAGACTTCAATGTCTCCGGTAACCGTCTCTCCGGCGAGATACCGAAAACTCTCTCGACATTCTCCGAATCCTCGTTCCGGGAAAACTCGTTTCTCTGTGGAGCTCCGTTGGAGAAATGCAAAGCGGAACCTAACAAACCTGGATCCGAAGGTGCCATTGCTACTTCACCATTGGTGCCAAGCAGTGAAACCCCAACCCCAACAACAACAGTTTCATCTTCACCAAGCACCATGCCAACAACTACACCAACAACAACAACAACCTTGAAAAGCCATGAAAAAAGAGGTTCAAAAATGAGTCCTATAGTTGTAATAGCAATCATAGTAGGTGACATTCTTGTTCTCGGAATAGTTTGTTTACTTCTCTACTGCTATTTCTGGAGAAACCACTCTTGGAAATCGGAACAGCGAAAAGGGTTGAAGCTATTCGAAAGCGAAAAGATAGTGTACTCTTCGAGTCCTTACCCTACTCAAGGAGGGTTTGAGAGGGGTAGAATGGTGTTTTTCGAAGGAGAAAAAAGGTTCGAGCTTGAGGATTTGTTGCGGGCTTCGGCTGAAATGCTAGGGAAAGGTGGATTTGGAACTGCTTATAAAGCTGTGCTTGATGATGGGAACGTTGTTGCTGTGAAGAGGTTGAAAGATGCACAGATTGCAGGGAAGAGAGAGTTTGAGCAACATATGGAGGTTCTTGGGAGGATTAGGCACCCGAATGTTGTGAGTTTGAGAGCTTATTATTTTGCAAGAGAAGAGAAGCTTTTGGTCTATGATTTCATGCCTAATGCTACTTTGTTCTGGCTTCTTCATGGAAACAGAGGACCTGGAAGAACCCCACTGGATTGGACCACAAGGCTTAAGATAGCAGCTGGTGCAGCACAAGGTGTAACTTTCATTCACAATTCATGTAAATCCCTTAAACTCACCCATGGTAACATCAAATCCACCAATATCCTCCTTGACAAGCAAGGAAATGCGCGTGTGTCGGATTTCGGGCTTTCAATCTTCAACAGCCCAAGCCCAATTGGAGCTGGTGGTAGATCAAACGGTTACCGTGCTCCTGAAGTAACCGACGGTCGAAAACAATCGCAGAAATCTGATGTGTACTCTTTTGGTGTTCTGTTGCTAGAGCTGCTTACAGGGAAGTGTCCCTCTGCTGTGGAGAGTGGTGGAAGTGGAGGTGGTTATGGTGGTTCGATGGTTGATCTTCCTAGGTGGGTTCAATCTGTTGTGAGAGAAGAATGGACTGCTGAGGTTTTTGATTTGGAGTTGATGAGGTATAAGGATATTGAAGAGGAAATGGTTGGGTTGCTTCAGATTGCTATGTCCTGTACTGCTGCTTTGCCTGATCAACGGCCGAGAATGTCGCATGTTGTTAAGATGATTGAGGACTTGCGCGGGGTCGAAGTGTCACCATGTCATGACACGGCGGGGTCTGTTTCTGACTCACCTTCTTTGTCCGAAGATGCCTGTGCTGGTACTAGTAGTCAGTAA 2037 0.4585 MASTLSLLILLLTLSHSLLIVQSSLNPDFESLLAFKTASDPSKKLTTWKNNTNPCSWTGVSCDKDRVTRLVLENLNLQGSIESLTSLTQLRVLSLKGNRFSGQVPNLSNLTSLKLLFLSHNHFSGEFPVTLTSLFRLYRLDLSYNNFSGEIPVTLNHLPHLLTLRLDKNQFSGLIPELNLLSLQDFNVSGNRLSGEIPKTLSTFSESSFRENSFLCGAPLEKCKAEPNKPGSEGAIATSPLVPSSETPTPTTTVSSSPSTMPTTTPTTTTTLKSHEKRGSKMSPIVVIAIIVGDILVLGIVCLLLYCYFWRNHSWKSEQRKGLKLFESEKIVYSSSPYPTQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRIRHPNVVSLRAYYFAREEKLLVYDFMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAAQGVTFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSIFNSPSPIGAGGRSNGYRAPEVTDGRKQSQKSDVYSFGVLLLELLTGKCPSAVESGGSGGGYGGSMVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAALPDQRPRMSHVVKMIEDLRGVEVSPCHDTAGSVSDSPSLSEDACAGTSSQ 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03540 678 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vifa3g03540 678 Gene3D Phosphorylase Kinase; domain 1 345 440 - -
Vifa3g03540 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 648 IPR046959 -
Vifa3g03540 678 FunFam Leucine-rich repeat receptor-like protein kinase 25 177 - -
Vifa3g03540 678 CDD STKc_IRAK 371 646 - -
Vifa3g03540 678 SUPERFAMILY L domain-like 45 221 - -
Vifa3g03540 678 ProSiteProfiles Protein kinase domain profile. 365 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03540 678 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Vifa3g03540 678 MobiDBLite consensus disorder prediction 654 678 - -
Vifa3g03540 678 MobiDBLite consensus disorder prediction 226 276 - -
Vifa3g03540 678 Pfam Protein kinase domain 369 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03540 678 SUPERFAMILY Protein kinase-like (PK-like) 369 643 IPR011009 -
Vifa3g03540 678 Gene3D Ribonuclease Inhibitor 179 227 IPR032675 -
Vifa3g03540 678 Gene3D Transferase(Phosphotransferase) domain 1 441 657 - -
Vifa3g03540 678 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 441 653 - -
Vifa3g03540 678 MobiDBLite consensus disorder prediction 238 273 - -
Vifa3g03540 678 MobiDBLite consensus disorder prediction 657 678 - -
Vifa3g03540 678 FunFam pollen receptor-like kinase 1 338 440 - -
Vifa3g03540 678 ProSitePatterns Protein kinases ATP-binding region signature. 371 403 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03540 Vifa-Chr3 1017805078 1017808516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03540 28 678 Receptor kinase-like Gene Family AT1G68400 65.269 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa3g03540 Pkinase 7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03540 - - cam:105851082 1025.77