Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03536 ATGAACAAAAAAAGGTCTTTGTTTATCTCTTCTCTTGTGATTTATCCATACTGCATCACCCTCTTCTATTTCCTCACAACAATCACTCTAAGCTATGCTGTGGATCCATATTTTGAAGCTTGTGAACCCAAAACATGTGGCAACCAAACTATAACCTACCCTTTCTACATCAAAGGAATACAAGAAACCTTTTGTGGTTACCCTGGTTTTGGTATCACTTGTGACAATACTATTGGTTTTCCAATCCTCAATCTTTCTAATACCTTTTACACAATCAACCAAATTTTGTATCAAAATCATTCATTTAGAGTGTCGAATCCTATGTTTTCAAGAACAGACACAAAAAAAGGTTGTCTTTCACTTTCACCTACCCAAAACCCCAGTTTTCCTAATAACACGTTCTATCTTGCACATAACCAAACTGAAGTGAGATTGTTCTTTGGATGCGACTCATCGAAGCTACCCAGAACTCTGCAAAGGAACAAAATCGGTTGCTCTGCAGAAAACGAAACGAGTTCGGTTGTGGCATTGTATGGAGATGATAAAAATGCAAGCTTTTTGTCTTGCAGAGATGACGTGGTTTACACGAGGGTGGAAAAAGGTGTGGAAGGAGGGATCCAAGAGGCTCTGAGAAATGGGTTTAGGTTGAATTGGAAAGCTAGTGATTGCAGGGAATGTAACAGTACTGGAGGAAGATGTGGGTTTGATGCAGATATATTCAATTTCAGATGTTACTGCACTGATAGAGTTCATGCTGCAAAATGTGATACAGATGCAGTCGCAGAGAAGTCTCAGGTGGTGCATATAGTGACAATAGTGGGCTCTGTGGCTGGAGTTGCATTTGCCTTGCTGATTGTTTTAGTCTGTTGGTTTAGAAAAAAGATCTTCCCTCCCACATTTCGTTTGTTCAACAAGAAGAATCCAACCCATCAAATTATTGAAAAGTTTTTGAAGGAACATGGACCTCTTTCTGCTGCTAGGTACAATTATTCTGATATAAAAAAGATAACAAATTCTTTCAAAAATAAATTAGGCCAAGGAGGGTACGGAAGTGTATACAGAGGGAAATTACAAGATGAGCGTAATGTTGCAGTGAAGATTTTGAGTGAATCAAAAGGTAATGGTGAAGATTTCATTAATGAAGTTGCTAGTATTAGTAGAACTTCACATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTAATATACGAATACATGCCTAATGGATCTCTTGAGAAATTCATATATGAAGAAAAAATTCCACCGCAGAGTGATCTCCAATTGGATTGCAAAACATTGTATGATATTGCAGTTGGCGTTGCTCGTGGATTAGAGTACTTGCATAGAGGCTGCAACACTAGAATCTTACATTTTGACATAAAGCCTCATAATATATTACTAGATGATGATTTTTGTCCTAAAATTTCTGATTTTGGCCTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCTGTATTTGGTGCGAGAGGAACACCAGGATATATTGCTCCAGAGTTGTTTTCTAGAAATTTTGGTGAGGTGTCACATAAATCAGATGTCTACAGCTATGGAATGATGGTTTTAGAGATGGTTGGACGAAGAAAGAACATTAAGATTGAAGTGGACTTTTCTAGCAAATTATATTTTCCTCACTGGATTTACAAGCGCCTTGAGTTAAATCAGGATCTTGAATTAAAGTGTATTAAAAATGAGATTGATGAAGAAATGGTAAGAAAAATGACAATGGTGAGTTTATGGTGCATACAAACCAACCCTTTGAATCGACCATCGATGCATAAAGTGGTAGAAATGTTGGAAGCAAACCTTAAAGAGTTAGAAATGCCACCCAAACCCTTTTTATCTTCTCCTCCAACATCTCCAACCCATTTATCATCTGAAATATTATAA 1932 0.3711 MNKKRSLFISSLVIYPYCITLFYFLTTITLSYAVDPYFEACEPKTCGNQTITYPFYIKGIQETFCGYPGFGITCDNTIGFPILNLSNTFYTINQILYQNHSFRVSNPMFSRTDTKKGCLSLSPTQNPSFPNNTFYLAHNQTEVRLFFGCDSSKLPRTLQRNKIGCSAENETSSVVALYGDDKNASFLSCRDDVVYTRVEKGVEGGIQEALRNGFRLNWKASDCRECNSTGGRCGFDADIFNFRCYCTDRVHAAKCDTDAVAEKSQVVHIVTIVGSVAGVAFALLIVLVCWFRKKIFPPTFRLFNKKNPTHQIIEKFLKEHGPLSAARYNYSDIKKITNSFKNKLGQGGYGSVYRGKLQDERNVAVKILSESKGNGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEYMPNGSLEKFIYEEKIPPQSDLQLDCKTLYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSVFGARGTPGYIAPELFSRNFGEVSHKSDVYSYGMMVLEMVGRRKNIKIEVDFSSKLYFPHWIYKRLELNQDLELKCIKNEIDEEMVRKMTMVSLWCIQTNPLNRPSMHKVVEMLEANLKELEMPPKPFLSSPPTSPTHLSSEIL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03536 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 310 630 IPR045874 GO:0004672
Vifa3g03536 643 Pfam Protein kinase domain 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03536 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vifa3g03536 643 Pfam Wall-associated receptor kinase C-terminal 185 248 IPR032872 -
Vifa3g03536 643 FunFam PR5-like receptor kinase 413 625 - -
Vifa3g03536 643 SMART serkin_6 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03536 643 MobiDBLite consensus disorder prediction 624 643 - -
Vifa3g03536 643 CDD STKc_IRAK 344 614 - -
Vifa3g03536 643 ProSiteProfiles Protein kinase domain profile. 338 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03536 643 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Vifa3g03536 643 FunFam serine/threonine-protein kinase PBS1-like 308 412 - -
Vifa3g03536 643 Gene3D Transferase(Phosphotransferase) domain 1 413 623 - -
Vifa3g03536 643 Gene3D Phosphorylase Kinase; domain 1 314 412 - -
Vifa3g03536 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vifa3g03536 643 SUPERFAMILY Protein kinase-like (PK-like) 322 614 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03536 Vifa-Chr3 1017197634 1017199910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03536 19 640 Receptor kinase-like Gene Family AT5G38260 40.524 9.01e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g03536 Pkinase 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03536 - - mtr:11418569 950.658