Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03535 ATGGCCTCACAACAAAGCGTCTTGTTGTTTTCATTCTTCATTATAATTCAAGTGCTACTAGCATCAGCTAACTGTCCAGCTTCAATTAACTGCGGACATGTCGGACAAATCGAGTTTCCTTTTACAACACCGCAACACCCAAACTGTGGCATGTTAACCATACACGGTTGTGATGACCCCGAACCACAATCCACAAAAAGCATTCAAAATAACAATAGATGGTTTGATGTACTCAAAATCAAACCCTTCACAATCACAATTCGGGACGATCAACTCCATGATTTATTGCAACAGAAAAGTTGCAATATTCTTAATTTCGATTCTATGTTTACTATCAACACGCCTTTGGTTTCGTCCAGTCTAGAGAATTATGTTACTGTTTTCGGATGCAGCAACATCAACAACACAGTCGATCTTCGACAGTACTATTCTTCTGTTTCTAATTCAACTTCTATTTGTACAACACAACTGTTCTCCAACAGTGATAAAACTATTGTGGTTGTAACTGATTCCACCACTTATCATCTCAAAGGATGTTCAAAGGTGGAGCTTCCAACTAAATATGAATATGAAGTTACAGGTGATGTTGACCCAGAAGATCTTTTTTACTACTTGATCGCTGATATTCCAATCAAATTACAAGTTTCCCAAGATTGTTCAAGTTGCCATGATATTGATGGAGGTCAATGTCGTCTTGATACACAAGGCCAGTTTTATTGTCACCAAGGGAAATCTAATAAGACCCTTCTAATAGTCACAACAGTTGCATCTTCTACTGGAGTACTTGGAGTTCTAGCTTTATTGGCTTGGTTCTTGAGAAGGCGTTTTATCAGCAACAAAAACTCACCATACCAAATAATTGAGTTGTTTCTGAAAAACCATGGTCATCTAGCAGCTAAAAGGTACACTTATACAGAAATAAAAAAAGTAACAAACTCGTTCAAAAACAAACTAGGCCGAGGAGGATACGGAAGTGTATACAAAGGAAAATTACAAGATGGGAGTCTTGTGGCAGTAAAGGTATTAAGTGAATCCAATGGTAACGGTGAAGAATTCATTAACGAGGTTGCAAGTATTAGTGTCACTTCTCATGTTAATATCGTTAGTTTATTGGGATTCTGTTTAGAAGGTTCTAAAAGAGCTTTGATATATGACTACATGCCTAACGGATCACTAGAAAAGTTCATATATCAAGACAAAGATCCACTAAAGCTAAATTTTCCATTGAGTTGCAATACTATCTACAATATTGCAATTGGCGTTGCTCAAGGATTAGAGTATTTGCACATGGGTTGCAATACTAAAATCTTGCATTTTGATATAAAACCTCATAATATATTACTAGATGGTGATTTTTGTCCTAAAATTTCTGATTTTGGACTTGCAAAAGTATGTCCAAGAAAAGAAAGTATTATATCTTTATTGGGTGCTAGAGGTACTGCAGGATACATTGCTCCTGAAGTGTTCTCTAGAAATTTCGGTTCAGTTTCTCACAAGTCTGATGTATATAGCTATGGAATGATGGTTTTGGAAATGGTTGGTGGAAAACAGAAGAACAGTATGGATGATGTTGAACGGTCGAGTGAAATTTATTTTCCACACTGGATTTACAAGCGCCTTGAACTGAATCAAGAATTTAGACTGCAAAGTAATAATAATGAATTTGATAAACATCGTGTTCGAAAGATGATTATAGTAAGCTTATGGTGCATCCAGACTGATCCATCCCATAGGCCTGAAATGAGTAAAGTAGTAGATATGATGGAAGGTAGCTTGGAATCTTTGCAAATACCACCAAAACCTTTCCTGTCTTCACCTCCTAGGCCTCCCTCAAAATCATCGGATTGTAACACTTACACATCTCATGATTCGTATCCTTCCGGCACACTCCATACCACTGATTGCCAACCTCTCTAG 1917 0.3709 MASQQSVLLFSFFIIIQVLLASANCPASINCGHVGQIEFPFTTPQHPNCGMLTIHGCDDPEPQSTKSIQNNNRWFDVLKIKPFTITIRDDQLHDLLQQKSCNILNFDSMFTINTPLVSSSLENYVTVFGCSNINNTVDLRQYYSSVSNSTSICTTQLFSNSDKTIVVVTDSTTYHLKGCSKVELPTKYEYEVTGDVDPEDLFYYLIADIPIKLQVSQDCSSCHDIDGGQCRLDTQGQFYCHQGKSNKTLLIVTTVASSTGVLGVLALLAWFLRRRFISNKNSPYQIIELFLKNHGHLAAKRYTYTEIKKVTNSFKNKLGRGGYGSVYKGKLQDGSLVAVKVLSESNGNGEEFINEVASISVTSHVNIVSLLGFCLEGSKRALIYDYMPNGSLEKFIYQDKDPLKLNFPLSCNTIYNIAIGVAQGLEYLHMGCNTKILHFDIKPHNILLDGDFCPKISDFGLAKVCPRKESIISLLGARGTAGYIAPEVFSRNFGSVSHKSDVYSYGMMVLEMVGGKQKNSMDDVERSSEIYFPHWIYKRLELNQEFRLQSNNNEFDKHRVRKMIIVSLWCIQTDPSHRPEMSKVVDMMEGSLESLQIPPKPFLSSPPRPPSKSSDCNTYTSHDSYPSGTLHTTDCQPL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03535 638 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Vifa3g03535 638 MobiDBLite consensus disorder prediction 596 638 - -
Vifa3g03535 638 Gene3D Transferase(Phosphotransferase) domain 1 387 597 - -
Vifa3g03535 638 SUPERFAMILY Protein kinase-like (PK-like) 296 588 IPR011009 -
Vifa3g03535 638 Pfam Protein kinase domain 315 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03535 638 Gene3D Phosphorylase Kinase; domain 1 291 386 - -
Vifa3g03535 638 PANTHER RUST RESISTANCE KINASE LR10-RELATED 285 609 IPR045874 GO:0004672
Vifa3g03535 638 SMART serkin_6 312 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03535 638 ProSiteProfiles Protein kinase domain profile. 312 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03535 638 FunFam serine/threonine-protein kinase PBS1-like 288 386 - -
Vifa3g03535 638 MobiDBLite consensus disorder prediction 609 638 - -
Vifa3g03535 638 FunFam PR5-like receptor kinase 387 600 - -
Vifa3g03535 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03535 Vifa-Chr3 1016869907 1016879052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03535 261 603 Receptor kinase-like Gene Family AT4G18250 54.701 1.56e-124 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g03535 Pkinase 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03535 - - psat:127098536 967.992