LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g03534	ATGAAGTTCAACGTTGCGAATCCCACCACTGGATGCCAGAAGAAGCTTGAAATTGATGATGACCAGAAGCTTCGTGCTTTTTGGGACAAGAGGATCTCTCAGGAGGTTAATGGTGATGCTTTGGGAGAGGAATTCAAAGGCTATGTTTTCAAAATTACTGGAGGGTGTGACAAACAAGGTTTTCCAATGAAGCAAGGAGTGTTAACTCCGGGTCGCGTTCGCCTCTTGCTTCATCGAGGAACTCCTTGTTTCCGAGGACACGGAAGGAGAAATGGGGAGCGAAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGCCCAGATCTATCTGTTTTAAACTTGGTGATTGTGAAGAAGGGTGAAAATGATTTGCCAGGCTTGACAGATGTTGAGAAGCCTAGAATGAGGGGTCCCAAGAGAGCTTCCAAGATCCGCAAGCTCTTCAATCTTTCTAAGGAGGATGATGTCAGGAAGTATGTCAACACATACCGTCGAACTTTCACAACCAAAGCTGGGAAAAAGCAGAGCAAAGCACCAAAGATTCAGCGCCTGGTCACTCCCCTGACACTTCAAAGGAAGAGGGCTAGAATTGCAGATAAGAAGAAAAGGATTGCTAAAGAAAAATCTGAGGCAGCTGAGTACCAAAAACTTCTCGCCTCCAGATTGAAGGAGCAGAGGGACCGCCGTAGTGAGAGTTTGGCTAAGAAGAGATCAAGGCTCTCTACCGCCAAGCCTGTTGCTGTAATGAGAGTACGAGAAGATACATGCTTGTCCAAATGA	777	0.4672	MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKQSKAPKIQRLVTPLTLQRKRARIADKKKRIAKEKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLSTAKPVAVMRVREDTCLSK	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g03534	258	Coils	Coil	189	216	-	-
	Vifa3g03534	258	MobiDBLite	consensus disorder prediction	222	237	-	-
	Vifa3g03534	258	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g03534	258	MobiDBLite	consensus disorder prediction	222	243	-	-
	Vifa3g03534	258	PANTHER	40S RIBOSOMAL PROTEIN S6	1	239	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g03534	258	PIRSF	RPS6e	1	250	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g03534	258	Gene3D	-	133	234	-	-
	Vifa3g03534	258	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g03534	258	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g03534	Vifa-Chr3	1016499637	1016501641	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g03534	1	247	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	73.494	4.56e-121	342

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g03534	K02991		-	gmx:547746	430.639