Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03533 ATGTCTCTAATCCATTTGTTCTGCTTCCTTTTGCTTTGTCACCTCGTGCTGATTTTATCAGGAGGGTATGGAAACGGGTACCAGGATAACTGTCCACACTCATTCAGCTGTGGAAGTCGTGGGATTTTTAGTTACCCTTTCACCAAGGCAGACCAACCAAACTGCGGCCTCATACTCATACATAGCTGTGATGACAGTTATTATTCACCCAAATTTATCCAACTGGAGAAGAATGCAAGAACCACAGAGCTAGCTGGTCCCGCTAACCAGAATACCATTACACTTTCTGATCAAGATTTTTATAAGCGTTTGCAAAATAACCCTTGTGACACTTTGAATAGCAGTTATCCTCTTCCTCCCCCTTCTCCTTTGGTTTCTTTTTATATAGTTTATAATGTAACTCTCTTCCGATGCAATCGCAGCCACAATATCGAACCCCCTGCACAATATTTTCGATACCCCTGTTCTTCCGATGATATCTATTATAACAGGAAACTATATCCCAATGATACTAAAGAAAAGGAACGTAGCCTTTTCTCATCCTGCTTGGTTCTTCAATTTCCAGCTAAAGACTTGACTGATACCAAAAACATTTTATCATTTGTATCTGCTCAGGTGAGTGTTAAAATAGAATTATCTGCTGATTGTGAAGAGTGCTGCAACCACAGAGGAGGCCAATGTCGACTTGATGCCAACAATAAGTTCTACTGCCATAATGTATCGGGCAAGAAGAAAAAGAGGCTGATCCGGAGTGTCAAACTGGGTATAGGAGCCATGGTGGTGGCTATTGGAATTGCAGTGGTTATATTGGCTTATGCAATTAGGAGAAATATCTTTTCTCTGGCGCTTCTTTTGTTTAGGAAGAAGAGTTCAACCCATCAAAATATTAAGGAGTTCTTGAAAGAACAAGGACCTCTTCTTGCTGCTAGGTACAATTATTTAGATGTCAAGAAAATAACGAACTCTTTTAAAAGTAAATTAGGCCAGGGAGGATATGGAATTGTATATAAAGGGAAGTTACATGATGACCGGGTGGTTGCAGTGAAGGTTTTAAGTGAATCAAAAGGTGATGGTGAAGATTTCATTAATGAAGTTGCGAGTATAAGTAGAACTTCGCATGTTAATGTTGTTAGACTTTTGGGGTTTTGTTTGGATGGTTCTAAAAAGGCACTAATTTATGAGTTCATGTCTAATGGATCTCTTGAGAAGTTCATATATGAAGACAAAAACTCACGTCAGGATGATCTCCAATTGAATTGCAAAACATTATATGATATTGCAGTTGGTGTGGGTCGTGGATTAGAGTACTTGCATAGAGGTTGTAACACGAGAATTTTGCATTTTGACATAAAGCCTCATAATATATTATTAGACGAAGATTTCTGTCCAAAAATTTCTGATTTTGGACTTGCGAAAGTATGTCCAAGAAAAGAAAGCATTATATCCATATTTGGTGCGAGGGGAACACCAGGATATATTGCTCCAGAGTTGTTTTCAAGAAATTTTGGTGGAGTATCACATAAGTCAGATGTTTACAGTTATGGAATGATGGTCTTAGAGATGGTTGGACGGAGAAAGAACATTAAGGTTGAAGTTGATTATTCTAGTGAGTTATACTTTCCACATTGGATTTACAAGCGTCTTGAATTGAATCTGGACCTTGGACTTAAGTGTATTAAAAATGAAATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACCAACCCTTCAAATCGACCATCGATGCATAAAGTGGTAGAAATGTTGGAAGGGAACCTTCAAGTGTTGGAAATGCCACCCAAACCCTTTTTGTCTTCTCCTTCAACATCTCCAACCCATTCATCATCTGAAATATTGTAA 1881 0.3822 MSLIHLFCFLLLCHLVLILSGGYGNGYQDNCPHSFSCGSRGIFSYPFTKADQPNCGLILIHSCDDSYYSPKFIQLEKNARTTELAGPANQNTITLSDQDFYKRLQNNPCDTLNSSYPLPPPSPLVSFYIVYNVTLFRCNRSHNIEPPAQYFRYPCSSDDIYYNRKLYPNDTKEKERSLFSSCLVLQFPAKDLTDTKNILSFVSAQVSVKIELSADCEECCNHRGGQCRLDANNKFYCHNVSGKKKKRLIRSVKLGIGAMVVAIGIAVVILAYAIRRNIFSLALLLFRKKSSTHQNIKEFLKEQGPLLAARYNYLDVKKITNSFKSKLGQGGYGIVYKGKLHDDRVVAVKVLSESKGDGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMSNGSLEKFIYEDKNSRQDDLQLNCKTLYDIAVGVGRGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKVCPRKESIISIFGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDYSSELYFPHWIYKRLELNLDLGLKCIKNEIDEEMVRKMTVVSLWCIQTNPSNRPSMHKVVEMLEGNLQVLEMPPKPFLSSPSTSPTHSSSEIL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03533 626 Pfam Protein kinase domain 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03533 626 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Vifa3g03533 626 Gene3D Phosphorylase Kinase; domain 1 284 395 - -
Vifa3g03533 626 SUPERFAMILY Protein kinase-like (PK-like) 306 597 IPR011009 -
Vifa3g03533 626 FunFam serine/threonine-protein kinase PBS1-like 288 395 - -
Vifa3g03533 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vifa3g03533 626 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Vifa3g03533 626 MobiDBLite consensus disorder prediction 607 626 - -
Vifa3g03533 626 FunFam PR5-like receptor kinase 396 608 - -
Vifa3g03533 626 SMART serkin_6 321 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03533 626 ProSiteProfiles Protein kinase domain profile. 321 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03533 626 PANTHER RUST RESISTANCE KINASE LR10-RELATED 288 615 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03533 Vifa-Chr3 1016215088 1016217621 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03533 9 623 Receptor kinase-like Gene Family AT1G66910 40.090 6.55e-130 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g03533 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03533 - - tpra:123901115 744.577