Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03525 ATGGCTTTAGTTGATGCAGTAGTACATTATAGGTTCCTTTTGTTCTATCATTTAACTATGCTACTGCTACTTATCTTAACTAGCAAAGGAAATGGAGACAGTGATGATTGTCCAGACTCATTTGATTGTGGAGATCTTGGGCTTCTTTGCTCTCCTTTTACCAAGGTTGGATTCCCACACTGTGGTGCATTGACAATTCAAGTTCGTGAAATTACCTTTCAATTTCAACTCTCTGATGAGTGTGAACGGTGTCACCGTGATAAGAAAGGTCATTGTAATGCTCGCAACAACGGACAAATTTATTGTTCAAGGAAGCATAGAAGTTCATCTTGGAAGCTACCATTGGTTTTAGGAGTCGGTGTAGGACCAGGGATCGTAGTTGGATTGTTCCTCACGCTACGGTACTTCAAACGGAAATATGACTCTGCACACATCCAACTCCAACCAAGCAACAACGCTTATGAAGAGCTTCAACAAGCAACCAACAATTTCGACAGCACTAGAATGCTAGGAGATGGCGGATTTGGCACTGTTTACTACGGGAAACTGAAAGATGGAAGGGAGGCAGCTGTGAAAAGATTGTTTGAGCACAATAACAGGAGAGTAGAACAGTTTGTGAATGAAATTGAATTACTCGCTCGCTTGCGCCATAGGAACCTGGTGTCCCTGTATGGCTGCACTTCGCGTCATAGCCGTGAGCTACTCCTTGTATATGAATACATTCCTAATGGAACTGTTGCTAGCCATCTCCATGGTGATTTAGCTAGAGCTGGTTTGTTGACATGGCCTATTCGAATGCAAATTGCAATAGAAACTGCTTCTGCATTGGCTTATCTACATGCTTCCGACATCATTCATCGTGATGTCAAAACCAACAACATTCTACTTGACGTTAACTTTTCTGTTAAGCTAGCAGATTTTGGATTATTGAGGATGTTCCCGAACAATGTCAGCCATGTTTCCACAGCTCCACAAGGAAGTCCGGGTTACCTTGACCCTGAATATTTCCAACTCTACAAGCTCTCAGTGAAGAGTAATGTTTATAGTTTTGGCGTTGTGCTCATCGAGCTAATATCTTCTATGACAGCAATTGATTCTGCTAGAGAAAAAGAGGAAATTAATTTGGCGAATCTAGCGGCTAAGAAGATAAGAAAAGGTGCAATTGGGGAGCTGGTTGACACATCACTTGGTTTTGAATCAGATAGTAAGTAA 1212 0.4175 MALVDAVVHYRFLLFYHLTMLLLLILTSKGNGDSDDCPDSFDCGDLGLLCSPFTKVGFPHCGALTIQVREITFQFQLSDECERCHRDKKGHCNARNNGQIYCSRKHRSSSWKLPLVLGVGVGPGIVVGLFLTLRYFKRKYDSAHIQLQPSNNAYEELQQATNNFDSTRMLGDGGFGTVYYGKLKDGREAAVKRLFEHNNRRVEQFVNEIELLARLRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVASHLHGDLARAGLLTWPIRMQIAIETASALAYLHASDIIHRDVKTNNILLDVNFSVKLADFGLLRMFPNNVSHVSTAPQGSPGYLDPEYFQLYKLSVKSNVYSFGVVLIELISSMTAIDSAREKEEINLANLAAKKIRKGAIGELVDTSLGFESDSK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03525 403 Gene3D Transferase(Phosphotransferase) domain 1 241 403 - -
Vifa3g03525 403 SUPERFAMILY Protein kinase-like (PK-like) 145 371 IPR011009 -
Vifa3g03525 403 ProSiteProfiles Protein kinase domain profile. 164 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03525 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Vifa3g03525 403 SMART serkin_6 164 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03525 403 ProSitePatterns Protein kinases ATP-binding region signature. 170 192 IPR017441 GO:0005524
Vifa3g03525 403 FunFam receptor-like protein kinase FERONIA 135 240 - -
Vifa3g03525 403 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 71 402 IPR044652 GO:0004672
Vifa3g03525 403 Pfam Protein tyrosine and serine/threonine kinase 167 362 IPR001245 GO:0004672|GO:0006468
Vifa3g03525 403 Gene3D Phosphorylase Kinase; domain 1 137 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03525 Vifa-Chr3 1014007489 1014009382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03525 50 401 Receptor kinase-like Gene Family AT1G25390 52.533 1.38e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa3g03525 PK_Tyr_Ser-Thr 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03525 - - gmx:100788638 478.789