Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03524 ATGAAACACAATTGTAGGTTCCTTATGTTCTCTCATTTAACTCTGCTACTGTTACTTGTCTTAACTATCATAGGAAATGGACACAGTGATGATTGTCCAAAGTCATTTGATTGTGGAAATCTTGGGTTTATTAGCTACCCTTTTACCAAGGTTGGATTCCCAAACTGTGGTGCATTGCCAATTCAAGGTTGCGATGATCCTAACAAAAATGCAATGAAGACGATCCATTTAACCAAAGGAGGAAAACACTTTCAAGTTACAAACATTGATAATACCTGGTCCAAGGGCAACCCTATTTCCATTATTGACCATGACTTCACCAACCTTTTGAATAAAAGTGCTTGTGAAGTCTACAACGATGTTAATATTAGCCTCCCTCCTCCCTCTCATTTCGGAACTTTTTATTTGAAAGACAATATAACTGCTTTCAAATGCAGCAGTACCAAAAAACTAGTCACCAACCCTCCAAACAATTTCTTCAAAAATAGTTCTTGTCCGAACTATGATTTTTATTTCGGTGATTCAATATCCGATGGTGAGTCTAATCGCTCTTTCACAACGTGCTCGTTGCGTCATCTTCCTGTCGTTGAACTAGGCTTTGCACTTTCTGGTAACCCATATCCGTTCTTAGCTCGTGATATTACCTATCAGTTTCAACCTTCTGAAGAGTGTGAACGGTGTTACCATAATACAAAACGTCATTGTCGTGCTCACAACAATGGAGAAGTTTATTGCCCAGGGAAGGGTAGAAGTTCAAATTGGAAGCTACGATTGGTTTTAGGAGTTAGTGTTGGACTATGCATCATCATCATAATTGGATTGTTCCACACGTTATGGCACTTCAAACGGAAATATGGCCTTGCTCACATCCAATGCCAAGCAAGCAACAACATTTCTGCTGACTTCCATGCAAATCGTGAAATGGAGTCCAACAAGCTCTTCTTCGGGGTATCTGTCTTCTCGTATGAAGAGCTTCGACAAGCAACAAACAATTTTGACCGCAGTAGAATGCTAGGAGATGGAGGTTTTGGCGCTGTTTACTATGGGAAAATCAAAGATGGGAGGGAAGTTGCTGTCAAACACTTATTTGAGCATAATTACAGAAGAGTAGAACAGTTTGTGAATGAAGTCGAAGTACTCGCTCGTCTGCACCATAGGAATCTAGTGTCCCTCTATGGCTGCACTTCACGTTACAGCCGTGAGCTACTCCTTGTATATGAATACATTCCAAATGGAACTGTCGCTAGCCATCTTCATGGTAATTTAGCTAGGGCCGGTTTGTTGACATGGCCTATTCGAATGCAAATTGCAATAGAAACTGCTTCTGCATTGGCTTATCTACATGCTTCCGATATCATTCATCGTGATGTCAAAACCAACAACATTCTACTTGACACTAACTTTTCTGTTAAGGTGGCCGATTTTGGACTATCGAGGTTGTTTCCAAACAATGTCAGCCATGTTTCCACAGGTCCACAAGGAAGTCCAGGTTACCTTGACCCCGAATACCTCCAACTCTACAAACTCTCGATGAAGAGTGATGTCTATAGTTTTGGCGTTGTGCTCATTGAGCTAATATCATCTATGACAGCAATTGATTCCTTCAGGGAAGGAGAGGATATTAACTTGGCAAGTCTAGCAGCTAAGAAAATAAGAAAAGGTGCAATTGGGGAGCTGGTTGACCCATTACTTGGTTTTGAATCAGACAGTGAAGTTAAAAGGATGATTACTTCAGTGGCAGAATTGGCTTTTCAGTGTGTGCTTGGAGACATGGAATTAAGACCTTCCATGGATCAAGTTTTGCAAGATCTCAAGAAAATTGATGGTGGGAATTTTGAGTTTGATCATCTTGAGAAAGTACATGATTATGCTGGCTCCTCGCAGTCTGGAGAAGTAAATTCACCAAGAGTTGGAACTTCAATCAATAAGAAGCAAGAGGGATCAACTTCACCAAAGTCATTGACTGAGAAATGGGAAAGTGAATCTACTACTCCCAATGTTAGTGGTTGA 2010 0.4065 MKHNCRFLMFSHLTLLLLLVLTIIGNGHSDDCPKSFDCGNLGFISYPFTKVGFPNCGALPIQGCDDPNKNAMKTIHLTKGGKHFQVTNIDNTWSKGNPISIIDHDFTNLLNKSACEVYNDVNISLPPPSHFGTFYLKDNITAFKCSSTKKLVTNPPNNFFKNSSCPNYDFYFGDSISDGESNRSFTTCSLRHLPVVELGFALSGNPYPFLARDITYQFQPSEECERCYHNTKRHCRAHNNGEVYCPGKGRSSNWKLRLVLGVSVGLCIIIIIGLFHTLWHFKRKYGLAHIQCQASNNISADFHANREMESNKLFFGVSVFSYEELRQATNNFDRSRMLGDGGFGAVYYGKIKDGREVAVKHLFEHNYRRVEQFVNEVEVLARLHHRNLVSLYGCTSRYSRELLLVYEYIPNGTVASHLHGNLARAGLLTWPIRMQIAIETASALAYLHASDIIHRDVKTNNILLDTNFSVKVADFGLSRLFPNNVSHVSTGPQGSPGYLDPEYLQLYKLSMKSDVYSFGVVLIELISSMTAIDSFREGEDINLASLAAKKIRKGAIGELVDPLLGFESDSEVKRMITSVAELAFQCVLGDMELRPSMDQVLQDLKKIDGGNFEFDHLEKVHDYAGSSQSGEVNSPRVGTSINKKQEGSTSPKSLTEKWESESTTPNVSG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03524 669 MobiDBLite consensus disorder prediction 623 669 - -
Vifa3g03524 669 SUPERFAMILY Protein kinase-like (PK-like) 312 604 IPR011009 -
Vifa3g03524 669 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 663 IPR044652 GO:0004672
Vifa3g03524 669 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Vifa3g03524 669 Gene3D Transferase(Phosphotransferase) domain 1 409 612 - -
Vifa3g03524 669 ProSiteProfiles Protein kinase domain profile. 332 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03524 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Vifa3g03524 669 FunFam receptor-like protein kinase FERONIA 294 408 - -
Vifa3g03524 669 SMART serkin_6 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03524 669 Pfam Protein tyrosine and serine/threonine kinase 335 603 IPR001245 GO:0004672|GO:0006468
Vifa3g03524 669 Gene3D Phosphorylase Kinase; domain 1 302 408 - -
Vifa3g03524 669 MobiDBLite consensus disorder prediction 626 669 - -
Vifa3g03524 669 FunFam Wall-associated receptor kinase-like 20 409 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03524 Vifa-Chr3 1013863242 1013865608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03524 34 669 Receptor kinase-like Gene Family AT1G25390 43.185 2.29e-156 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa3g03524 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03524 - - aprc:113871895 747.658