Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03523 ATGAAACAAATTGTGAAACATAATTCTATGGTTTTAGTTGATGCAGTACTACATCATAGGTTTCTTTTGTTGTCTCATTTAACTCTGCTACTGCTACCTATCTTAACTAGCAAAGGAAGTGGACACAGTGATGATTGTCCAGACCCATTTGATTGTGGCTATCTTGGGTTTATTCGCTACCCTTTTACCAAGGTTGGATTCCCAAACTGTGGTGCATTGGCAATTCAAGGTTGTGATGATCCTAACAAAACTGCAATGAAGACCGTCAAATTAACCCAAGGAGGGAAACCTTTTCAAGTTACAAACATTGTTAATTGCTTGTCTAAGGGAAACTCTATTTCCATTATTGACCAGAACTTCACCAACCTTTTTATGAAAAGTGCTTGTGAAGTCTTCACCAATGTTAATATTACCCTCCCTCCTTCCTCTCCTTTTGGAACTTTTTATTTGAAAGACAATATAACTGCTTTCAAATGCAAACGTACCCAAAAATTAGTCACCAACCCTCCAAACAATTTCTTCAAAAATAGTTCTTGTCCGAACTATGATTTTTATTTCGGTGATTCAATATCCGATGGTGAGTCTAATCGATCTTTCACGTCGTGCTCGTTGTTTCATCTTCCTGTCATTCAATTAGGCTTTGCACTTTCTGGTAACCCATATCCGTTCTTAGCTCATGAAATTACCTATCAATTTCAACCTTCTGATGACTGTGAACGGTGTTACCGTGATACAAATGGTCATTGTCGTGCTCACAACAACGGACAAATTTATTGCCCAGGGAAGGGTAGAAGTTCAACTTGGAAGCTACAATTGATTATAGCTGTCGTGGTCTTGGTAACTATTGGAGTTGGAGGGCTTATGTTATTGGCATATTGCATTAGGAAAAAGATCACCCCTCCAGCATTTCTTTTATTCAGGGAGAAGAGTTCAACCAATCAAATTATTGAAGATTTTTTGAAAGAACATGGACACCTTCCGGCAGCAAGGTATAGTTATTCAGATGTCAAGAAAATAACAAACTCTTTTAGAAACAAATTAGGCCAAGGAGGGTTTGGAAGTGTATACAAAGGGAAGTTACATGATGAATGTGTTGTTGCAGTGAAGATTTTAAGTGAACCAAAAGGTGATGGTGAAGATTTTATTAATGAAGTTGCAAGTATCAGTAGAACTTCGCATGTCAACATTGTTAGACTTTTGGGATTCTGTTTGGATGGTTCTAAAAAGGCACTAATATATGAATTCATGTCTAATGGATCTCTTGAGAAGTTCATATATGAGGAGAAAAATCCATTGAAGGATGATCACCAATTGGATTGCAAAATACTTTATGATATTGCAGTTGGCGTTGCTCGAGGACTAGAGTACTTGCATAGAGGTTGCAACACTAGAATCTTACATTTCGATATAAAACCTCATAATATATTACTTGATGAGGATCTCTGTCCGAAAATTTCAGATTTTGGACTTGCTAAAATATGTCTAAAAAATGAAAGCATTGTATCTATATTTGGTGCAAGGGGAACACCAGGATATATTGCTCCAGAGTTGTTCTCCAGAAACTTTGGTGGGGTGTCACATAAATCAGATGTCTATAGTTATGGAATGATGGTTTTAGAAATGGTTAGTCAAAGAAAGAACATTAAAGTTGAAGTGGATTGTTCTAGTGAGTTATATTTTCCACACTGGATTTATAAACGTCTTGAATTGAATCAGGATCTTGTACTTAAGTGTGTTAAAAATGAAATTGATGAAGAAATAGTAAGAAAAATGACAATGGTGAGTTTATGGTGCATACAAACTGACCCTTCAAATCGACCATCAATGCGTAAAGTGGTGGAAATGTTGGAAGGGAGCCTCCAAGTGCTAGAGATACCGCCCAAACCCTTTTTGTCTTCTCCTACAACATCTTCAATCCAAATATCATCTGAAATATTGTAA 1941 0.3663 MKQIVKHNSMVLVDAVLHHRFLLLSHLTLLLLPILTSKGSGHSDDCPDPFDCGYLGFIRYPFTKVGFPNCGALAIQGCDDPNKTAMKTVKLTQGGKPFQVTNIVNCLSKGNSISIIDQNFTNLFMKSACEVFTNVNITLPPSSPFGTFYLKDNITAFKCKRTQKLVTNPPNNFFKNSSCPNYDFYFGDSISDGESNRSFTSCSLFHLPVIQLGFALSGNPYPFLAHEITYQFQPSDDCERCYRDTNGHCRAHNNGQIYCPGKGRSSTWKLQLIIAVVVLVTIGVGGLMLLAYCIRKKITPPAFLLFREKSSTNQIIEDFLKEHGHLPAARYSYSDVKKITNSFRNKLGQGGFGSVYKGKLHDECVVAVKILSEPKGDGEDFINEVASISRTSHVNIVRLLGFCLDGSKKALIYEFMSNGSLEKFIYEEKNPLKDDHQLDCKILYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDEDLCPKISDFGLAKICLKNESIVSIFGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVSQRKNIKVEVDCSSELYFPHWIYKRLELNQDLVLKCVKNEIDEEIVRKMTMVSLWCIQTDPSNRPSMRKVVEMLEGSLQVLEIPPKPFLSSPTTSSIQISSEIL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03523 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Vifa3g03523 646 Gene3D Phosphorylase Kinase; domain 1 317 415 - -
Vifa3g03523 646 Pfam Protein kinase domain 345 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03523 646 SMART serkin_6 341 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03523 646 ProSiteProfiles Protein kinase domain profile. 341 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03523 646 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vifa3g03523 646 Gene3D Transferase(Phosphotransferase) domain 1 416 630 - -
Vifa3g03523 646 PANTHER RUST RESISTANCE KINASE LR10-RELATED 313 634 IPR045874 GO:0004672
Vifa3g03523 646 FunFam serine/threonine-protein kinase PBS1-like 309 415 - -
Vifa3g03523 646 FunFam PR5-like receptor kinase 416 628 - -
Vifa3g03523 646 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03523 Vifa-Chr3 1013702090 1013704411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03523 217 632 Receptor kinase-like Gene Family AT4G18250 50.115 3.55e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g03523 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03523 - - tpra:123901115 733.021