Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03522 ATGACCTCTCTTTTCATTTTCAAGTCATTAATATTCTTCCAGTTTCTACTTGTTTCAGCTCAAGATCATGAAAGATGTCCAACTTCTTTTAGTTGTGGATATCTTGGCCAAATTAGATTCCCTTTCACAGTTCCACAACACCCTCAGTGCGGCGCTTTGGCAATACTTGGTTGTGACAATAAGAATACAACTGCTCCCAAAACCATCCAACTAGGCAGCCCACCATCAAAACAGATTTTTACTGTAACATATGTGGAACCTGAAACCATCACGGTCACGGAAAATGAAGCTCAACGGAAGAAATTGCAATCCAAAAATTGTCATGCCTTTCACAATTTTTCTGTTTCTCCCACTTCTCCTTTAGCTTCTTTCTACATCAAATATAATATAACTATGTTCAAATGCAATCACTCCCTTAGTGTCATCCCTCCCAAATCATTTTATAGCTACACAAACTGTACTGGCTATAGTATCTTCTATGGCCTTCAAAACTCTGGTGGTAATTTCGAAGTGCCAAGTTCTTTGACACAGTGTACAGTGTTTCAGGTTGCATTAAGAGACAGCCCTACTAATGACCCATTTGATTTTCTATCTCCTGAAATCCAAATTGAAGTACAATTATCTGATGATTGCAACAAGTGTCTTCGTCACCAACATGGCCGATGTCAACTTGACATTCACGGAAAGTTTCACTGTACCAAAGAGGATAGAAGATGGGCTTGGAAGTTAGGACTAGGCATTGGACTCCTTGTCATTATTATAACTGGATTGCTGATTATGTGGCGCTGTAAACGACGCGTTCCTAATTTCTACAACAAATACACAGAGAGTGACAGTATCTACAATGGGGTGCCAGTTTTTTCCTTTAAGGATCTTGAAGTAGCAACAAAAAAATTTGACAGTTCAAGAGAACTCGGAGAAGGAGGATTTGGGACTGTTTATTATGGAAAACTAAAAGATGGACGTGAAGTTGCGGTGAAGCGCCTATATCAGCACAACTTCAAACGAGTTGAACAGTTCATGAATGAAATCAAAATCCTCACTCGCTTGCGCCACAGAAATCTAGTTACCCTTTATGGCTGCACTTCACATCAAAGTCATGAACTACTGCTTGTATATGAATATGTTTCAAATGGAACTGTCGCAAGCCATCTGCGTGGTGAATCTGGCTTTTTACCGTGGCATATCCGAATGAAAGTTGCCTTAGAGACTGCTACTGCTTTGGCTTATCTCCATGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTACTTGACGACACCTTTTGCATTAAAGTTGCAGATTTTGGACTCTCAAAACTGTTCCCAAATGATGTCACACATGTCTCCACAGCTCCACAAGGAACCCCAGGCTATGTGGATCCGGAATATTATCAATGCTACTGGCTTACGAGCAAGAGTGATGTTTACAGTTTTGGGGTTGTGCTTATTGAGCTGATATCATCTATGCCCGCAGTTGATATGAGCAGAGATAAGGAGGAGATAAACTTGTCAAACCTAGCCATAAGGAAGATTCAAAAAAGTAAAATCAGTGAACTGGTGGATCCTTCCCTTGGTTTTGAGTCAGATAGTGATGTTAAGAGAGAAATAGTTTCCATAGCAGAGCTGGCTTTTCAGTGTCTGCAACGAGATAAGGATTTGAGGCCTTCCATGGATGATGTTTTGGAGGTGCTGAAGAGAATTGATAAAGGAAGTAGGAGGGATGAGTTTGGACATGTAGAGGAAGTAATAGCGCGAGGAGCAGGGATATCACGTATCAATGTACATTCTATGTCACCAACTTCATCCGACCATGTTGAGATGAACTTGTCAAAGAATGAAAAATTAACACCTTCTCCTAAGGGTGTGACAGATAAATGGGATAGTGAATCCACTACTCCTAATATAAGTGGTCAGTCAGCAAGCCAAATGTAA 1944 0.4038 MTSLFIFKSLIFFQFLLVSAQDHERCPTSFSCGYLGQIRFPFTVPQHPQCGALAILGCDNKNTTAPKTIQLGSPPSKQIFTVTYVEPETITVTENEAQRKKLQSKNCHAFHNFSVSPTSPLASFYIKYNITMFKCNHSLSVIPPKSFYSYTNCTGYSIFYGLQNSGGNFEVPSSLTQCTVFQVALRDSPTNDPFDFLSPEIQIEVQLSDDCNKCLRHQHGRCQLDIHGKFHCTKEDRRWAWKLGLGIGLLVIIITGLLIMWRCKRRVPNFYNKYTESDSIYNGVPVFSFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLYQHNFKRVEQFMNEIKILTRLRHRNLVTLYGCTSHQSHELLLVYEYVSNGTVASHLRGESGFLPWHIRMKVALETATALAYLHASEIIHRDVKTNNILLDDTFCIKVADFGLSKLFPNDVTHVSTAPQGTPGYVDPEYYQCYWLTSKSDVYSFGVVLIELISSMPAVDMSRDKEEINLSNLAIRKIQKSKISELVDPSLGFESDSDVKREIVSIAELAFQCLQRDKDLRPSMDDVLEVLKRIDKGSRRDEFGHVEEVIARGAGISRINVHSMSPTSSDHVEMNLSKNEKLTPSPKGVTDKWDSESTTPNISGQSASQM 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03522 647 FunFam Wall-associated receptor kinase-like 20 376 580 - -
Vifa3g03522 647 SMART serkin_6 299 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03522 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Vifa3g03522 647 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03522 647 Gene3D Phosphorylase Kinase; domain 1 271 375 - -
Vifa3g03522 647 Gene3D Transferase(Phosphotransferase) domain 1 376 588 - -
Vifa3g03522 647 ProSiteProfiles Protein kinase domain profile. 299 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03522 647 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 635 IPR044652 GO:0004672
Vifa3g03522 647 FunFam receptor-like protein kinase FERONIA 266 375 - -
Vifa3g03522 647 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Vifa3g03522 647 MobiDBLite consensus disorder prediction 598 647 - -
Vifa3g03522 647 SUPERFAMILY Protein kinase-like (PK-like) 275 572 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03522 Vifa-Chr3 1013456395 1013459099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03522 30 641 Receptor kinase-like Gene Family AT1G25390 44.969 7.41e-162 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa3g03522 Pkinase 1.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03522 - - aprc:113871893 772.311