Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03521 ATGTCTCTAATCCATTTGTTCTGCTTCCTTTTGCTTTGTCACCTCGTGCTGATTTTATCAGGAGGGTATGGAAATGGGTACCAGGATAACTGTCCACACTCATTCAGCTGTGGAAGTCGTGGGATTTTTAGTTACCCTTTCACCAAGGCAGACCAACCAGACTGCGGCCTCATACTCTTACATAGCTGTGATGACAGTTATTATTCACCCAAATTTATCCAACTGGAGGAGAATGCAGGAACCACAGAGCTAACTGGCCCCGTTAACCAGAATACCATTACACTTTCTGATCAAGATTTTTATAAGCGTTTGCAAAATAACCCTTGTGGCACTTTGAATAGCAGTTATCCTCTTCCTCCCCCTTCTCCTTTGGTTTCTTTTTATATAGTTTATAATGTAACTCTCTTCCGATGCAATCACAGCCACAATATCAAACCCCCTGCACAATATTTTCGATACCCCTGTCCTTCCGATGATATCTATTATAACAGGAAACTATATCCCAATGATACTAAAGAAAAGGAACGTAGCCTTTTCTCATCCTGCTTGGTTCTTCAATTTCCAGCTAAAGACTTGACTGATACCAAAAACATTTTATCATTTGTATCTGCTCAGGTGAGTGTTAAAATAGAATTATCTGCTGATTGTGAAGAGTGCTGCAACCACAGAGGAGGCCAATGTCGACTTGATGCCAACAATAAGTTCTACTGCCATAATGAGCCGAAGAATAAGAGAGTTTATTTTAAGCTGCTACTTGGACTCGGAATAGGCTTAGGCATTACATTGGTTGCACTGGGTATTCTTATAGTTCGATGCCTCTCCAGAAGGAAACATGCTCGATCAAGCCTCCAGAATCAATCGAAAAGAAAATCATATAATGATGAAATCGATCCATATCAAAATCAAGACTCAGAAAACGGCACTGTCTACTTTAAAATACCTCTGTTCTCTTATAAGGAGCTAGAAGAAGCTACAAATAATTTCCACCAAGCCAACAAACTTGGAAGTGGAGGCTTTGGAATAGTTTATTACGGGAGACTGCAAGATGGACGAGAAGTTGCTGTTAAGCGCCTATACCAACATAACTGGAGGCGAGTAGAACAGTTCACAAACGAAATTGAGATCCTTGCTCGCACCCGACACGCAAATCTTGTGTCCCTCTACGGTTGTACTTCACATCACAGCGATGAACTACTGCTAGTGTACGAATATGTTCCAAACCACACTGTTGATTTTCATCTCCAAGGTGATCTAGCAAGAACAAGAGTAATGTCTTGGCATATCAGGATGAAAATTGCCATAGAGACAGCAAGTTCATTGGCTTATCTGCATGCTTCTGGCATAATCCACCGTGATGTGAAAACCAAAAACATTCTCCTTACAAACAGCTTCAGTGTCAAAGTTGCAGATTTCGGTCTTTCAAGGCTATTCCCCCACGATATCACTCATGCTTCCACGGCACCACAAGGGACACCGGGTTACGTTGACCCAGACTATCATCAATGCTACCAGCTTACTAACAAGAGTGATGTATACAGTTTTGGCGTTGTGCTTGTTGAGCTTATATCATCTAAGCTTGCTGTTGATATGGACAGGCATAAGGATGAGATTAACTTGGCAAACCTGGCCTTAAAGAAGATCCAGAAGGGTGAATTTACTGAGCTGGTGGATCCTAATCTTGGTTTTGATTCAGACAATGAGGTTAAGAGGATGATAGTATCGGTGGCAGAGTTGGCTTTTCAATGTTTGCAAAGGGAAAAGGAATTGAGACCTTCCATGGATGAGGTTTTGAAGGTGCTGATGAGAATTGAAAGTGGGAAGCATGAACCTGAGCATATAGTTGAAGAAGATGTGCATCCACCTTCACCAGATGGAAATGAGGATGAGATTGGACTTTTCCAAAAAACAACGCGACAGCCTTCACCTAAAGCTGTGGTTGATGAATGGGATAGTCGATCTACTACGTCTAATACCATCAGTGGTCATTAA 1989 0.4163 MSLIHLFCFLLLCHLVLILSGGYGNGYQDNCPHSFSCGSRGIFSYPFTKADQPDCGLILLHSCDDSYYSPKFIQLEENAGTTELTGPVNQNTITLSDQDFYKRLQNNPCGTLNSSYPLPPPSPLVSFYIVYNVTLFRCNHSHNIKPPAQYFRYPCPSDDIYYNRKLYPNDTKEKERSLFSSCLVLQFPAKDLTDTKNILSFVSAQVSVKIELSADCEECCNHRGGQCRLDANNKFYCHNEPKNKRVYFKLLLGLGIGLGITLVALGILIVRCLSRRKHARSSLQNQSKRKSYNDEIDPYQNQDSENGTVYFKIPLFSYKELEEATNNFHQANKLGSGGFGIVYYGRLQDGREVAVKRLYQHNWRRVEQFTNEIEILARTRHANLVSLYGCTSHHSDELLLVYEYVPNHTVDFHLQGDLARTRVMSWHIRMKIAIETASSLAYLHASGIIHRDVKTKNILLTNSFSVKVADFGLSRLFPHDITHASTAPQGTPGYVDPDYHQCYQLTNKSDVYSFGVVLVELISSKLAVDMDRHKDEINLANLALKKIQKGEFTELVDPNLGFDSDNEVKRMIVSVAELAFQCLQREKELRPSMDEVLKVLMRIESGKHEPEHIVEEDVHPPSPDGNEDEIGLFQKTTRQPSPKAVVDEWDSRSTTSNTISGH 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03521 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vifa3g03521 662 MobiDBLite consensus disorder prediction 648 662 - -
Vifa3g03521 662 FunFam receptor-like protein kinase FERONIA 289 404 - -
Vifa3g03521 662 SUPERFAMILY Protein kinase-like (PK-like) 310 603 IPR011009 -
Vifa3g03521 662 ProSiteProfiles Protein kinase domain profile. 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03521 662 MobiDBLite consensus disorder prediction 608 624 - -
Vifa3g03521 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 654 IPR044652 GO:0004672
Vifa3g03521 662 Gene3D Transferase(Phosphotransferase) domain 1 405 614 - -
Vifa3g03521 662 Pfam Protein kinase domain 328 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03521 662 MobiDBLite consensus disorder prediction 608 662 - -
Vifa3g03521 662 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vifa3g03521 662 Gene3D Phosphorylase Kinase; domain 1 299 404 - -
Vifa3g03521 662 FunFam Wall-associated receptor kinase-like 20 405 612 - -
Vifa3g03521 662 SMART serkin_6 328 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03521 Vifa-Chr3 1013441438 1013443790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03521 35 658 Receptor kinase-like Gene Family AT1G25390 46.929 1.30e-164 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa3g03521 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03521 - - psat:127098519 1131.7