Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03520 ATGAGTCTAGTTTATGAATTTATGTTCCTTTTATTTTCACACCTTGTACTGCGTCTTGTGTTGGCGGGTGGATATGAGGATAAATACGGAGATTGTCCAACTTCATTTAGTTGTGGATATCTTGGCAATATCAGCTTCCCTTTTACTACAACACAACGCCAGGACTGTGGCTTATTGCCAATACAATATTGTGATGATGTTTCAATGAAGCCCAAAATGATCCAACTTCAGAATAAAAGGAAACAGTTTGAGTTTGACGTAGAATTTGTAAGTCCGACAGAGTATCACGGAGGTCATGCTACTTCTGATTGTGTTTTTAGAGACAATAGTCTGCGCAAACTGCTGCAAAACCAACGTTGTGAAGCGTTCAGATATAATTACACTCTTCCTCTCACTCCTCACTTTGCTTTTTATTTGGAAACTTACACAAGCTTGTTCATGTGCAACCGTACCCTCCATTTCAACCCTCCTACATATATTCATAACTATACAAAGTGCCCTCACTATAATTTCTACTACCAGCCTCACATCTATTCTGATAAAGAGTCTTGGAGTGCTTTTACAGCTTGTGCAAATGTCAAACTTCCTATTAAAGACATCGCTGACTCTGACGATCCTTTTACTTTTATAACTGCTGATATCCCAACTAAAGTAAGCGTAACAGAGGAATGTGCATATTGTCACTACAACCAAAGAGGACGGTGTCAACTTGACAGCAACGGAAGTTTTTTTTGTGCCAATGCGGTTGCAAAGCGAAAAAGGCTGAGGCGGAATCTTAAACTGGGTATAGGTTTGGGTATTGGAATCCTGGGCATCTTGTTTATCGGAGAAATTGGTAGTAAACACTTCGGAGTTCCATTATTCTCCTACGACGAGCTTAGAAAAGCAACAAACAATTTCGACCATACTAAGGAACTCGGAGATGGAGGTTTTGGTACTGTCTACTTTGGAAAACTTCCCGATGGACGTGAAGTAGCTGTCAAACGTTTATACGAACACAACTATAGAAGAGTAGAACAGTTTATGAATGAAGTTAATATCCTGACAACTTTACGCCATAAAAATCTCGTGTCCCTCTATGGCTGCACATCACGGCACAGCCGTGAACTACTGCTTGTGTACGAATATATCTCAAATGGCACCATTGCAAGTCATCTCCATGGTGAATTGGCCGAGCCCAACTTACTACCGTGGTCTATACGAATAAAAATTGCCATAGAGACTGCTACTGCCTTGACTTATCTCCATGCTTCTGGTATCATCCACCGTGATGTGAAAACCAGTAACATACTCCTTGACGACAATTTTCGTGTTAAAGTTGCAGATTTTGGCCTTTCAAGATTATTCCCTGAGGATGCCACTCATGTCTCCACAGCTCCGCAAGGGACACCAGGTTACCTTGACCCCGAGTATCACCAATTTTATCAGCTTACTAGCAAGAGTGATGTATATAGTTTTGGAGTTGTTTTGATTGAGCTAATATCATCTAAGCCTGCCGTTGATATAAACAGAAGTAGGGAAGAGATTAACTTGTCAACTCTAGCAACAAAGAAGATTCAAGAAAGTGCAATTGATGAGCTGGTAGATCCTAGTCTTGGTTTTCATTCAGACAATGAGGTTAATAGCATGATAGTTTCAGTGGCAGAATTGGCATTTCAATGTTTGCAAAGGGACAAGGAGTTGAGACCTTCTATGGAAGAAGTGTTAGATGAACTTAGGAGAATAGAGAGTGGGAGGGATGTGGTTGAGGTTGTAGACGAAGCAGATGTTGATGCTGTTGGTGGTGGATCTTCACACAGTAATGTAAATCCGCCACCAGCCTCACCTGAATGGGATGAAGTTGGTTTATTGAGGAATGTGAAAAATATGAAGCATCCGTCTTCACCAAACACCGTCACTGATAAATGGGAAAGTATTAGTACTACACCTAATGCCAGTGCTTAA 1944 0.4084 MSLVYEFMFLLFSHLVLRLVLAGGYEDKYGDCPTSFSCGYLGNISFPFTTTQRQDCGLLPIQYCDDVSMKPKMIQLQNKRKQFEFDVEFVSPTEYHGGHATSDCVFRDNSLRKLLQNQRCEAFRYNYTLPLTPHFAFYLETYTSLFMCNRTLHFNPPTYIHNYTKCPHYNFYYQPHIYSDKESWSAFTACANVKLPIKDIADSDDPFTFITADIPTKVSVTEECAYCHYNQRGRCQLDSNGSFFCANAVAKRKRLRRNLKLGIGLGIGILGILFIGEIGSKHFGVPLFSYDELRKATNNFDHTKELGDGGFGTVYFGKLPDGREVAVKRLYEHNYRRVEQFMNEVNILTTLRHKNLVSLYGCTSRHSRELLLVYEYISNGTIASHLHGELAEPNLLPWSIRIKIAIETATALTYLHASGIIHRDVKTSNILLDDNFRVKVADFGLSRLFPEDATHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSKPAVDINRSREEINLSTLATKKIQESAIDELVDPSLGFHSDNEVNSMIVSVAELAFQCLQRDKELRPSMEEVLDELRRIESGRDVVEVVDEADVDAVGGGSSHSNVNPPPASPEWDEVGLLRNVKNMKHPSSPNTVTDKWESISTTPNASA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03520 647 Gene3D Phosphorylase Kinase; domain 1 279 376 - -
Vifa3g03520 647 MobiDBLite consensus disorder prediction 591 647 - -
Vifa3g03520 647 Gene3D Transferase(Phosphotransferase) domain 1 377 587 - -
Vifa3g03520 647 Pfam Protein kinase domain 302 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03520 647 SUPERFAMILY Protein kinase-like (PK-like) 282 572 IPR011009 -
Vifa3g03520 647 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Vifa3g03520 647 SMART serkin_6 300 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03520 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vifa3g03520 647 MobiDBLite consensus disorder prediction 623 647 - -
Vifa3g03520 647 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 641 IPR044652 GO:0004672
Vifa3g03520 647 ProSiteProfiles Protein kinase domain profile. 300 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03520 647 FunFam Wall-associated receptor kinase-like 20 377 584 - -
Vifa3g03520 647 CDD STKc_IRAK 306 575 - -
Vifa3g03520 647 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 275 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03520 Vifa-Chr3 1013437075 1013439813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03520 36 647 Receptor kinase-like Gene Family AT1G25390 44.618 7.63e-164 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa3g03520 Pkinase 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03520 - - gmx:100305407 730.709