Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03512 ATGGCTTCAAGGTCATATTCCAATTTGTTAGATCTTACTTCATGTGGCTCGCCGTCGTCTTTCGGTCGGGAGAAGAAAAGGCTTCCTAGAGTAGCAACTGTTGCTGGAGTGTTGTCTGAGTTAGATGATGAAACAAATACCAGTGTTGGCTCTGATGCTCCTTCGTCTGTTTGTCAAGAAAGGATGATTATTGTTGGTAACCAGCTTCCGGTGAAGGCGCAAAGGAAAGAGGAGAATGGTAAGTGGGAGTTTACTTGGGATGAGGATTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTCGAAACGATCTATATCGGTTGTCTTAAAGAAGAGATTGATCCAATTGAGCAAGATGATGTTGCTCAATACTTGCTTGATAATTTCAAGTGTGTACCGACTTTTCTCCCTCCTGAGCTTTTTACTAAATTCTATCATGGTTTTTGTAAGCAACATCTTTGGCCTTTGTTTCATTACATGCTTCCGCTTTCGCCTGATCTTGGTGGTCGATTCGATCGATCCCTTTGGCAGGCTTATGTTTCTGTCAACAAGATATTTGCTGATAAAGTGATGGAAGTCATTAACCCTGATGAGGACTTTGTTTGGGTTCATGACTACCACTTGATGGTTCTACCAACTTTTTTGCGAAAGAGATTTAATCGGGCGAGGCTAGGATTCTTCCTCCATAGTCCTTTTCCGTCTTCCGAGATATACCGAACGCTTCCGGTTAGGGATGAACTTCTTAGAGCCCTTCTGAATTCTGACCTTATAGGGTTTCATACTTTTGACTATGCTAGACATTTCCTCTCCTGCTGCAGTAGAATGCTAGGAATTGCTTATCAATCCAAGCGAGGGTATATCGGTCTCGAGTACTATGGAAGAACTGTTAGCATTAAGATTCTTCCGGTTGGTATTCATATAGGCCAGCTCGAATCGGTCATGAATCTTTCCGAGACAGAAAGCAAGGTTGCCGAATTAAGAAACCGGTTCAAAGGTCAAACTGTTATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTTTTGGCCATGGAACAATTGCTTTTACAACATGCTGATAAGAGAGGAAAGGTTGTTCTGGTTCAAATCGCAAACCCTGCTAGAGGCCGCGGAAAGGATGTGCAAGAAGTGCAGTGTGAAACTTATGCAACAGTGAAAAGGATAAACGACACATTCGGAAGGCCTGGATACACACCCGTCATCTTGATCGATACAACACTGCAAAGTTATGAGCGGATTGCTTATTATGCAATTGCGGAATGTTGTCTTGTTACAGCTGTAAGAGACGGGATGAACCTTATACCCTATGAGTATATCATTTGTAGACAAGGAAATGAGAAAATAGACGAGATCTTAGGAATAAGCTCGACTATTCATAAGAAGAGTATGTTGGTGGTGTCTGAGTTCATTGGTTGCTCTCCATCGTTAAGTGGCGCGATTCGTGTGAATCCGTGGAATATTGATGCTGTTGCTGAAGCTATGGATTCTGCATTAATGGTCCCGGAGTCTGAAAAACAAATGAGGCATGAGAAGCATTATAGCTTGTGCAGTGACACCAAGAATTGTGTTTTCCTTGTAAGTGGAAAGGAGAGAAAGACTCTTACCGAATGGTTTTCTTCTTGCGAGAAGCTTGGACTTGCTGCAGAGCACGGCTATTTCGTGAGGACAAGTCATACTGAAGAATGGGAAGCTTGTGTTTCTGTGCCTGATTTTGACTGGAAACAGATCGCTGAGCCAGTTATGCAGTTATATACAGAAACTACTGATGGTTCTAACATAGAGTCCAAAGAGAGTGCACTTGTTTGGAATTACGAATTTGCAGACCGAGATTTTGGTTCATGCCAAGCTAAGGAGCTTCTTGATCATCTAGAAAGTGTTCTCGCCAATGAGCCTGTTTCAGTTAAAAGTGGCCCAAACATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTTGCGGAACGTCTTCTGACAACAATGCAACAAAAGGGTGTGATTCCGGATTTCGTTCTATGCATTGGTGATGACAGATCCGATGAAGACATGTTTGGAGTAATAACAAGTGCAAGGGCATTGCTATCGCCTATTGCTGACGTCTTTCCTTGTACTGTTGGTCAGAAACCAAGCAAGGCAAAGTACTACTTGGAAGACACAAGTGAGATTTTAAGGATGTTGCAGGGTCTTGCCAATGCTTCTGAGCAAAGTGCTGCTAGAAATTCATCCCAGTTTCCTCATCATTAA 2283 0.4258 MASRSYSNLLDLTSCGSPSSFGREKKRLPRVATVAGVLSELDDETNTSVGSDAPSSVCQERMIIVGNQLPVKAQRKEENGKWEFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGKVVLVQIANPARGRGKDVQEVQCETYATVKRINDTFGRPGYTPVILIDTTLQSYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKIDEILGISSTIHKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPESEKQMRHEKHYSLCSDTKNCVFLVSGKERKTLTEWFSSCEKLGLAAEHGYFVRTSHTEEWEACVSVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPNIVEVKPQGVSKGIVAERLLTTMQQKGVIPDFVLCIGDDRSDEDMFGVITSARALLSPIADVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQSAARNSSQFPHH 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03512 760 Pfam Trehalose-phosphatase 527 733 IPR003337 GO:0003824|GO:0005992
Vifa3g03512 760 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 529 - -
Vifa3g03512 760 Gene3D Glycogen Phosphorylase B; 315 529 - -
Vifa3g03512 760 NCBIfam trehalose-phosphatase 527 743 IPR003337 GO:0003824|GO:0005992
Vifa3g03512 760 CDD GT20_TPS 61 527 IPR001830 GO:0003824|GO:0005992
Vifa3g03512 760 Gene3D Glycogen Phosphorylase B; 55 314 - -
Vifa3g03512 760 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 626 756 - -
Vifa3g03512 760 FunFam Trehalose-6-phosphate synthase 2 580 659 - -
Vifa3g03512 760 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 527 IPR001830 GO:0003824|GO:0005992
Vifa3g03512 760 Pfam Glycosyltransferase family 20 61 529 IPR001830 GO:0003824|GO:0005992
Vifa3g03512 760 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 507 613 - -
Vifa3g03512 760 FunFam Alpha,alpha-trehalose-phosphate synthase 315 530 - -
Vifa3g03512 760 Gene3D - 622 759 IPR023214 -
Vifa3g03512 760 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 313 - -
Vifa3g03512 760 CDD HAD_TPP 528 734 - -
Vifa3g03512 760 SUPERFAMILY HAD-like 528 743 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03512 Vifa-Chr3 1010934323 1010937201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03512 527 743 Trehalose Biosynthesis Gene Families AT4G17770 72.146 5.59e-104 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03512 K16055 - gmx:100782799 957.977