Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03502 ATGTTCCCTTTCATCTTCCTCCATCTTCTTCTCTTCTTCACCACTTTCACACCTCAAGTAACCTCTCTAAACCCTGAAGGCTATGTCCTCTTAACACTCAAACAATCCATCACAGACCCACAAGGCTCCATGAACAACTGGAACTCTTCTGACCAAAACCCATGTTCATGGAACGGAATTACATGCAAAGACCAAACCGTTGTTTCCATCAGTATCCCGAAAAGGAAACTTCACGGTTCTCTCCCTCCTTCTCTAGGATCTCTCTCAAATCTTCGCCATCTCAACTTCAGAAACAATCAACTCTTTGGTACTTTACCTCAAGACCTTTTTCAAGCCACAGGTCTTCAAAGTTTAGTGCTTTATGGAAATTCCTTATCTGGGCCTGTCCCAAATGAGATTCAGAATCTTAAGTACCTTCAAACTCTTGATTTGTCTCAGAATATCTTTTATGGGTCATTACCTGATTCAGTTCTTGAATGTAAGAGACTTAAAGCTCTTGTTTTGAGTAGAAACAATTTTACTGGCTTTTTGCCTGATGGATTTGGTGCTGGTTTGTCTTCTCTTGAGAAGCTTGATCTTTCTTTCAATGATTTTCATGGTTTGATTCCTGGTGACATTGGAAAATTGTCAAGTTTGCAAGGGAATCTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGTCTTGGAAATTTGCCTGAGAAGGTTTATATTGATCTTACATACAATAATTTGAGTGGCTCAATACCACAAAATGGTGCTTTGATGAATAGAGGACCTACTGCTTTTATTGGAAACCCTGGCTTATGTGGCCCACCTTTGAGGAATCCATGTGGCTCCGATGTTCCTGTTCCTGCTCCAGCTACTAGTTCACCTTCCTCAAATCCAAACCTTCCTGGTTCTGTGAAAAACAAAGGGCTGAGTAAAGGTGCTGTGGTTGGGATTGTTGTTGGTGATTTGATAGGAATTTGTCTTTTAGGTTTGTTGTTTTCGTTCTTTTACTCGAGGGTTTGCGGTTTTAATCAGGATCAGGATGATGAGAATGATGTTAACAACAAGGGAATGAAAAGAGGGAAAGAGTGTTTTTGTTTCAGAAAAGATGGATCTGAGGTACTATCTGATAATGTTGAGCAATATGATCTTGTTCCGTTAGATTCACAAGTTGCTTTTGATTTGGATGAGCTTCTTAAGGCTTCGGCTTTCGTTCTTGGTAAGAGTGGAATAGGGATTATGTACAAAGTTGTGCTTGAAGAAGGGCTTGCTTTGGCTGTGAGAAGATTGGGGGAAGGTGGTTCTCAAAGGTTTAAAGAGTTTCAAACGGAAGTTGAAGCTATAGGGAAGTTGAGACATCCAAATGTTGCTACTCTTCGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATGTACCAAATGGAAGCCTTGCTACCGCAATTCATGGGAAGGTTGGACTTGCCACATTTGTGCCGCTAACTTGGTCAGATCGGTTGAAAATCATGAAAGGAACAGCAAGAGGTGTGGTCTACCTGCATGAATTCAGCCCCAAAAAGTATGTCCATGGAGATCTAAAGCCAAGTAACATACTTCTCGGACATGACATGACACCCTACATTTCTGATTTCGGACTAGGTCGCCTCGCAAACATCGCAGGCACTTCCCCGACCCTTCAATCAAACCGAGTGGCTGCAGAAAAACTGCAAGATAGACAGAAGAGTCTGTCCCATGAAACCGCAACAAATATTTTAGGAAATGGCTATCAAGCTCCAGAAGCATTAAAAGTAGTGAAACCGTCGCAGAAATGGGATGTTTATTCATACGGCGTGATCTTGTTGGAAATGATCACGGGAAGATTACCTATTGTTCAAGTAGGTAACACAGAAATGAACCTCGTTCAATGGATTCAGTTTTGCATCGAAGAGAAGAAGCCACTCTCGGATGTGTTAGATCCATATTTGGCTGAAGACTCGGACAAAGAGGAAGAGATAATTGAAGTTTTGAAGATTGCTATGGCTTGTGTTAATAGCAGCACTGAAAAAAGACCCACAATGAGGCATGTACTCGATGCTTTGGATAGATTGTCTGTTTCATCTGATTGA 2112 0.4105 MFPFIFLHLLLFFTTFTPQVTSLNPEGYVLLTLKQSITDPQGSMNNWNSSDQNPCSWNGITCKDQTVVSISIPKRKLHGSLPPSLGSLSNLRHLNFRNNQLFGTLPQDLFQATGLQSLVLYGNSLSGPVPNEIQNLKYLQTLDLSQNIFYGSLPDSVLECKRLKALVLSRNNFTGFLPDGFGAGLSSLEKLDLSFNDFHGLIPGDIGKLSSLQGNLDLSHNHFSGSIPASLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLRNPCGSDVPVPAPATSSPSSNPNLPGSVKNKGLSKGAVVGIVVGDLIGICLLGLLFSFFYSRVCGFNQDQDDENDVNNKGMKRGKECFCFRKDGSEVLSDNVEQYDLVPLDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEEGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVATLRAYYWSVDEKLLIYDYVPNGSLATAIHGKVGLATFVPLTWSDRLKIMKGTARGVVYLHEFSPKKYVHGDLKPSNILLGHDMTPYISDFGLGRLANIAGTSPTLQSNRVAAEKLQDRQKSLSHETATNILGNGYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGNTEMNLVQWIQFCIEEKKPLSDVLDPYLAEDSDKEEEIIEVLKIAMACVNSSTEKRPTMRHVLDALDRLSVSSD 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03502 703 MobiDBLite consensus disorder prediction 288 303 - -
Vifa3g03502 703 Pfam Protein kinase domain 405 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03502 703 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 183 - -
Vifa3g03502 703 Pfam Leucine rich repeat 89 147 IPR001611 GO:0005515
Vifa3g03502 703 Pfam Leucine rich repeat 162 223 IPR001611 GO:0005515
Vifa3g03502 703 SMART serkin_6 404 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03502 703 SUPERFAMILY L domain-like 25 277 - -
Vifa3g03502 703 Gene3D Phosphorylase Kinase; domain 1 372 474 - -
Vifa3g03502 703 SUPERFAMILY Protein kinase-like (PK-like) 404 695 IPR011009 -
Vifa3g03502 703 CDD STKc_IRAK 405 698 - -
Vifa3g03502 703 SMART LRR_typ_2 136 160 IPR003591 -
Vifa3g03502 703 SMART LRR_typ_2 209 234 IPR003591 -
Vifa3g03502 703 SMART LRR_typ_2 88 112 IPR003591 -
Vifa3g03502 703 SMART LRR_typ_2 185 208 IPR003591 -
Vifa3g03502 703 PANTHER OS05G0588300 PROTEIN 132 698 - -
Vifa3g03502 703 Gene3D Transferase(Phosphotransferase) domain 1 475 703 - -
Vifa3g03502 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Vifa3g03502 703 FunFam Leucine-rich repeat receptor-like protein kinase 382 474 - -
Vifa3g03502 703 MobiDBLite consensus disorder prediction 283 303 - -
Vifa3g03502 703 Gene3D Ribonuclease Inhibitor 77 283 IPR032675 -
Vifa3g03502 703 Gene3D Ribonuclease Inhibitor 17 76 IPR032675 -
Vifa3g03502 703 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vifa3g03502 703 ProSiteProfiles Protein kinase domain profile. 399 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03502 703 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
Vifa3g03502 703 FunFam Leucine-rich repeat protein kinase family protein 475 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03502 Vifa-Chr3 1009314883 1009317317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03502 4 703 Receptor kinase-like Gene Family AT2G01210 65.969 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa3g03502 Pkinase 1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03502 - - gmx:100792873 1082.01