Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03491 ATGCCATGCCAAAGTTCTCCATCTTCAGTTTATGACCTGCACATTCATACAAAAAAATACCAAGTTACTCCTCGTGTTGATCATTATACATGCATTGTTGATCTTCTTGGCCGTACGGGTCGACTGAATGATGCTTACAATCTTATTAGAATAATGCCTATAACACACAACCATGCGATATGGGGTGCACTACTTGGTGCTCGCGACGATTCTTCGCGTTTGGAAGAAGCGCTTATTCAGGATGAAGAAAGTAAGCTATACACAGGAGATGGCTCGGTCGACTTTAAAGGGAGGCCTGTGCTTAAGAAGAATACTGGCAATTGGAAAGCTTGCCCATTTATCCTAGCTATCAGTGCTTCCAATTCGGAGTTCCGTGGTGATGATCCGGAGAAGGATCAGATCCATGCGGCAACGCTACTCAGTTTGGGAGGACATCGGATTGATTCCAATAAGGATGATGTTGCGGAGGCGCTTTCGAGGCAGTATTGGGAATACAATGTGCTTGACTATAAAGAGAAAGTAGTTGATGGTTTTTATGACATATATGGCCTCTATAATGACCCAGCAATGCAAGGAAAGATGCCATCTCTAGCTGATCTTGAAACAAACTCAGGTGGTTCTAGCTTTGAAGTAGTCATAGTTAATAGGACAATTGATCCTGCCCTGGACGAGCTGGTGCAAATTGCACACTGTATAGCATTGGACTGCCATGTCTCTAAGATTGGTATTTTGGTGCAAAGGCTTGCTGAACTTGTTACTAGCCATATGGGCGGCCCTGTAAAAGATGCTAATATTATATTAACAAAATGGACAGAAAGAAGTACAGAATTAAGGACATCTCTTCACACAAGTGTATTACCTCTTGGGTCCTTAGATATTGGGCTCTCTAGGCATCGCGCTTTACTTTTCAAGATATTAGCGGACAACATTCAGATGCCTTGTAGACTGGTTAAAGGTAGTCATTACACTGGTGTTGAGGATGATGTTGTCAACATTATAAAATTAGATGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCGAAGGATAATGCCTTTAAGTCTTACAGCCCCAAGAATGTGCCAGAGTCAGAAGGGAAACCAGACTTGAATTGTGTTACAACTAGGACTGGGAAGCGATCTAGGCCATGTAGTTGGAAGAGGCGTAAATGCAAAAAGCAGAAGCAATCAACTGCTGAAGATGTTGATCTAAATATTCAATGCAAGTTGCTTCCAAATAATACAGATTGCATGCTTGCTAATCAACAGCATGTCACCATTATTGCTTCATCGCTGCAATTTCACAGCAACATTGACGTCAAGAAGGACGAGCATTCGAAAAGCAGAAAAAAGCAGAAGACGGTATCGCAAGGAAACGAAAGAACCAAAGATTTTATACCTCAAGTCTACATCAGTATCTCTGGTTTTCTACTTCTACTCGCCGCTGTTGATACGTATCGGACGATCTCCGATAGGTAA 1515 0.4205 MPCQSSPSSVYDLHIHTKKYQVTPRVDHYTCIVDLLGRTGRLNDAYNLIRIMPITHNHAIWGALLGARDDSSRLEEALIQDEESKLYTGDGSVDFKGRPVLKKNTGNWKACPFILAISASNSEFRGDDPEKDQIHAATLLSLGGHRIDSNKDDVAEALSRQYWEYNVLDYKEKVVDGFYDIYGLYNDPAMQGKMPSLADLETNSGGSSFEVVIVNRTIDPALDELVQIAHCIALDCHVSKIGILVQRLAELVTSHMGGPVKDANIILTKWTERSTELRTSLHTSVLPLGSLDIGLSRHRALLFKILADNIQMPCRLVKGSHYTGVEDDVVNIIKLDDEREFLVDLMAAPGTLIPADILNAKDNAFKSYSPKNVPESEGKPDLNCVTTRTGKRSRPCSWKRRKCKKQKQSTAEDVDLNIQCKLLPNNTDCMLANQQHVTIIASSLQFHSNIDVKKDEHSKSRKKQKTVSQGNERTKDFIPQVYISISGFLLLLAAVDTYRTISDR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03491 504 Gene3D Tetratricopeptide repeat domain 4 109 IPR011990 GO:0005515
Vifa3g03491 504 Pfam Ethylene-responsive protein kinase Le-CTR1 155 353 - -
Vifa3g03491 504 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 158 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03491 Vifa-Chr3 1005566626 1005569095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03491 115 366 MAP Kinase Kinase Kinase AT1G08720 62.891 3.17e-106 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03491 - - aprc:113870732 452.981