Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03480 ATGTATAATAAGGACGTTTGTTCTCCCTCATCTCAAAGAGGATTCGGCATCGGCCTCAACTCCGCCGGCAACATGCAGTTGAACGCCGGCGCGTTCGCTTCGTTGTACTCCTCTCTGACTAATAGTAACTCGTCACTATCCGGAAACAGCAACAACAGCGGCGGCGTTTCACTTTATCCGTACTCTGACTCTGAAACTGAGTACGACTCGTTCGTTATCCAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGCCTCATGGAAGCTTCCAATGAGGTTGAAGCTCTGCAGCAAGAGAACGAAGAGCTCCGTGCTTTGAGCAAAGATTTGCAGAAGAATCTGAACCTCCTAGTTCAGGCTTCACTGGAGAACAGACTTGGCCGTGGCGGCGGCTCCTCCGTTCAGACTCAATCGATTCCGTTAGATGTATTGCACTGTGCCCGTGGCTTGAATCTTGGAGATGGAAAAGAAAACTGTGCTGGTTACAATAACAATAACATCAATAATAATAAGGAGCTGCTAGAAGATTCGGATGAGAGTTCAACGAGTGTAATAGATGATAACGATGTTGATGATGAAGCGGAACGGTTCTCTCTGCCGAAGAGCATTTCTGTGAGATCCAAAGGCTACGTGAAGGTGGCTCAGCCTCCAGCGGTCGTAACTAACAATAATGCTTGTCGCAGCACCAAAGGCGCTCCCCGCTCTCGTGCGTCTTCCACTCAACCAGATCAAGCTCAAAAGGTATATGTCCGCGGAGGGCAGAAAGAGGAAGAACCTCTTGAGATGACTGTGTATAATCAGGGGATGTTAAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGTGCATGCCCTTATACTGACCACTGCCAATTCGCTCATGGTATTGAGGAGCTTCGCCCGGTGATTCGCCACCCACGCTACAAAACTGAGGTCTGTAGGATGGTTTTTGCTGGGGTTGTCTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAGCAAGAGAAAGCTGTATCACAATCTATGCCAAGATCAATGAAGATGGAAATATAA 1074 0.4804 MYNKDVCSPSSQRGFGIGLNSAGNMQLNAGAFASLYSSLTNSNSSLSGNSNNSGGVSLYPYSDSETEYDSFVIQKHQDMVNRHSMCLSRLMEASNEVEALQQENEELRALSKDLQKNLNLLVQASLENRLGRGGGSSVQTQSIPLDVLHCARGLNLGDGKENCAGYNNNNINNNKELLEDSDESSTSVIDDNDVDDEAERFSLPKSISVRSKGYVKVAQPPAVVTNNNACRSTKGAPRSRASSTQPDQAQKVYVRGGQKEEEPLEMTVYNQGMLKTELCNKWQETGACPYTDHCQFAHGIEELRPVIRHPRYKTEVCRMVFAGVVCPYGHRCHFRHALTEQEKAVSQSMPRSMKMEI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03480 357 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Vifa3g03480 357 FunFam zinc finger CCCH domain-containing protein 15-like 267 306 - -
Vifa3g03480 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 299 IPR000571 GO:0046872
Vifa3g03480 357 FunFam Zinc finger protein 36, C3H1 type-like 1 307 343 - -
Vifa3g03480 357 MobiDBLite consensus disorder prediction 225 251 - -
Vifa3g03480 357 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Vifa3g03480 357 MobiDBLite consensus disorder prediction 225 259 - -
Vifa3g03480 357 Coils Coil 90 124 - -
Vifa3g03480 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 76 347 IPR045877 GO:0003729
Vifa3g03480 357 Gene3D - 267 306 - -
Vifa3g03480 357 Gene3D - 307 343 - -
Vifa3g03480 357 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Vifa3g03480 357 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Vifa3g03480 357 SUPERFAMILY CCCH zinc finger 308 338 IPR036855 GO:0046872
Vifa3g03480 357 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03480 Vifa-Chr3 1002349366 1002351163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03480 61 346 C3H Transcription Factor Family AT1G68200 48.333 4.04e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g03480 zf-CCCH 3.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03480 K18753 - gmx:100819250 419.083