Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03465 ATGGACTCCCACTATTTCCACTGTATAATATTCTCCTTGGCCGCCGTTTCCACTCTACGCTCACGCTCACGACCCAACCACCACCGTTTCACTCCTTTCCACTGTACGCTCACACTCACGACCCAAACACCGCCGTTTCCCAGCCACCATCATCGACCGCCGTTTCCGAAGGTTTTTGACCGCCGTTTCTGTTCGTTTTTCCGCCGTTTCCGAAGGTTTTTTCCGCCGTTTCGACCGCCGTTTCCGGTCTTCCTCTTCGACCTCCGTTTCCGGTCGTCCTCTTTGACCGCGGCCGTTTCCGGTCTTCCTCTTCAACCGCCGTTTCCGGTCGTCCTCTTCGACCGCGGTGGTTTCCGTTCGTGTTCAGGTTCCATGGATTTCGCCGCCGTGAGTTTGCCGCTGTTTGACATGGCTCAGAAAATCTGCAAATGGATTACTCAAATATTGTTGGTTGTAGAACACCTGCGTTCAAAATTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCACGATGTTTGCCTGGGTCGTAGGAACTTCCAACTACATGAATGGAAAGCTCTGCTTCTGATGGAACAATATTATGCTATCAAATGCCCTTCAACATCTTATCATTTAGTTGGCACCAAGGAGATTGAAAACAAACTTTCAAAGCTTAATATCTATGAATATCAAGAAATGAAGCATCTTGATTTTATTGAATTTTATGATGTGCTAGCTGCTGAAGCTGCACTTTGGCCATTGAACCAGATTGGATTTGCTGGAAAGAAGATCAAGCTTACACCTGACCATCCTTTCTGTTGA 819 0.4701 MDSHYFHCIIFSLAAVSTLRSRSRPNHHRFTPFHCTLTLTTQTPPFPSHHHRPPFPKVFDRRFCSFFRRFRRFFPPFRPPFPVFLFDLRFRSSSLTAAVSGLPLQPPFPVVLFDRGGFRSCSGSMDFAAVSLPLFDMAQKICKWITQILLVVEHLRSKFVLHRDLKCSNIFLTKDHDVCLGRRNFQLHEWKALLLMEQYYAIKCPSTSYHLVGTKEIENKLSKLNIYEYQEMKHLDFIEFYDVLAAEAALWPLNQIGFAGKKIKLTPDHPFC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03465 272 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 133 181 - -
Vifa3g03465 272 SUPERFAMILY PreATP-grasp domain 188 214 IPR016185 -
Vifa3g03465 272 Gene3D Transferase(Phosphotransferase) domain 1 134 189 - -
Vifa3g03465 272 SUPERFAMILY Protein kinase-like (PK-like) 140 180 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03465 Vifa-Chr3 990991523 990994769 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa3g03465 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03465 K08857 - gmx:100780141 78.9517