Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03464 ATGGACTCCCACTATTTCCACTGTATAATATTCTCCTTGGCCGCCGTTTCCACTCTACGCTCACGCTCACGACCCAACCACCACCGTTTCACTCCTTTCCACTGTACGCTCACACTCACGACCCAAACACCGCCGTTTCCCAGCCACCATCATCGACCGCCGTTTCCGAAGGTTTTTGACCGCCGTTTCTGTTCGTTTTTCCGCCGTTTCCGAAGGTTTTTTCCGCCGTTTCGACCGCCGTTTCCGGTCTTCCTCTTCGACCTCCGTTTCCGGTCGTCCTCTTTGACCGCGGCCGTTTCCGGTCTTCCTCTTCAACCGCCGTTTCCGGTCGTCCTCTTCGACCGCGGTGGTTTCCGTTCGTGTTCAGGTTCCATGGATTTCGCCGCCGTGAGTTTGCCGCTGTTTGACATGGCTCAGAAAATCTGCAAATGGATTACTCAAATATTGTTGGTTGTAGAACACCTGCGTTCAAAATTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCACGATGTTTGCCTGGGGGATTTTAGACTTTCTAAGATACTAAAAGCTGATGATTTGACTTCTTCAGTCGTAGGAACTTCCAACTACATGTGCCCTAAAATGTTTGCCGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGCTCAAATACTAAAACTTTTTTGTACATGGTGTTGTATACATGAGATGACTGCTCAACGCCCTGCTTTCAAAGCTTTTGAATGGAAAGCTCTGCTTCTGATGGAACAATATTATGCTATCAAATGCCCTTCAACATCTTATCATTTAGTTGGCACCAAGGAGATTGAAAACAAACTTTCAAAGCTTAATATCTATGAATATCAAGAAATGAAGCATCTTGATTTTATTGAATTTTATGATGTGCTAGCTGCTGAAGCTGCACTTTGGCCATTGAACCAGATTGGATTTGCTGGAAAGAAGATCAAGCTTACACCTGACCATCCTTTCTGTTGA 1005 0.4488 MDSHYFHCIIFSLAAVSTLRSRSRPNHHRFTPFHCTLTLTTQTPPFPSHHHRPPFPKVFDRRFCSFFRRFRRFFPPFRPPFPVFLFDLRFRSSSLTAAVSGLPLQPPFPVVLFDRGGFRSCSGSMDFAAVSLPLFDMAQKICKWITQILLVVEHLRSKFVLHRDLKCSNIFLTKDHDVCLGDFRLSKILKADDLTSSVVGTSNYMCPKMFADIPYGFKSDIWSLAQILKLFCTWCCIHEMTAQRPAFKAFEWKALLLMEQYYAIKCPSTSYHLVGTKEIENKLSKLNIYEYQEMKHLDFIEFYDVLAAEAALWPLNQIGFAGKKIKLTPDHPFC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03464 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vifa3g03464 334 Gene3D Transferase(Phosphotransferase) domain 1 135 295 - -
Vifa3g03464 334 Pfam Protein kinase domain 140 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03464 334 ProSiteProfiles Protein kinase domain profile. 1 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03464 334 SUPERFAMILY Protein kinase-like (PK-like) 140 259 IPR011009 -
Vifa3g03464 334 SMART serkin_6 86 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03464 334 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 133 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03464 Vifa-Chr3 990991523 990994769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03464 136 228 MAP Kinase Kinase Gene Family AT4G26070 40.426 2.04e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa3g03464 Pkinase 4.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03464 K08857 - gmx:100780141 175.252