Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03445 ATGGCTTCACGCAGACTCGTATCGTCTCTGATTCGATCTTCTCTTCGTCGATCCTCATCGAAACCCTCCATCTCCGCCTCAACTTCGAGGCTCACTTCTCAATCCCGTGCCTCTCCTTGCGGCTACCTTCTTAACCGCGTAGCCGATTACGCCACTTCCGCCGCAGCCGCTGCTACTCCTCCATCTCCGCCTCCAGCGAAAAAGGAGGTTCCCGGTGGTGGTAAAATCACCGATGAGTTTACAGGTAAGGGTGCGATTGGACATGTTTGCCAGGTTATTGGTGCCGTCGTCGATGTCAGATTCGAGGAGGGTTTGCCTCCGATCTTGACTGCTCTTGAGCTTTTGGATCATGAGACACGGTTGGTGTTGGAAGTTGCTCAGCATTTGGGTGAGGGCGTTGTCAGAACTATTGCTATGGATGCTACTGAAGGTGTCGTTAGAGGGTGGCGTGTGCTCAACACTGGATCCCCTATCAGTGTTCCTGTTGGTAGGGCAACCCTTGGCCGTATCATGAATGTTATCGGAGAGCCTATTGATGAGAAGGGTGAATTGAAAACCGAGCATTTTTTGCCCATCCATAGAGAAGCCCCTTCTTTTGTTGAGCAAGCAACTGAACAGGAGATTCTTGTTACTGGTATCAAGGTTGTTGACCTACTTGCACCATACCAAAGGGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTTGGAAAAACTGTGCTTATTATGGAACTTATCAACAATGTTGCTAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACTCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAAAGTGGTGTCATTAAGCTGGGTGATAAGCAGAGCGAAAGCAAGTGTGCTCTTGTGTATGGACAAATGAATGAACCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGACTTACTGTTGCCGAGCACTTCCGTGATGCCGAGGGCCAAGATGTGCTTCTTTTTGTTGACAACATTTTCCGTTTTACTCAAGCTAATTCAGAGGTGTCTGCTTTACTTGGTCGTATCCCATCTGCTGTTGGCTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAACGTATTACTACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACTACCTTTGCTCACTTGGATGCCACAACAGTGTTGTCACGACAGATCTCTGAGCTTGGTATCTATCCGGCTGTTGACCCATTGGATTCCACATCTCAAGTCTTCACTGGTGCCCCTGGCAAATATGTTGACTTGAAGGAGAACATTACTAGTTTCCAGGGTGTGTTGGATGGCAAGTACGATGACCTTTCAGAGCAGTCATTTTACATGGTTGGTGGTATTGAAGAGGTCATTGCAAAGGCAGAGAAGATTGCTAAGGAATCAGCAGCATCTTCATCTTAA 1485 0.4795 MASRRLVSSLIRSSLRRSSSKPSISASTSRLTSQSRASPCGYLLNRVADYATSAAAAATPPSPPPAKKEVPGGGKITDEFTGKGAIGHVCQVIGAVVDVRFEEGLPPILTALELLDHETRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDEKGELKTEHFLPIHREAPSFVEQATEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSQVFTGAPGKYVDLKENITSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESAASSS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03445 494 PANTHER ATP SYNTHASE 69 435 - -
Vifa3g03445 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 436 IPR027417 -
Vifa3g03445 494 SMART AAA_5 224 418 IPR003593 GO:0016887
Vifa3g03445 494 NCBIfam F0F1 ATP synthase subunit beta 86 435 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa3g03445 494 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 212 433 IPR000194 GO:0005524
Vifa3g03445 494 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 157 IPR036121 GO:0046034|GO:1902600
Vifa3g03445 494 Gene3D - 75 157 - -
Vifa3g03445 494 FunFam ATP synthase subunit beta 1 50 - -
Vifa3g03445 494 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vifa3g03445 494 CDD F1-ATPase_beta_CD 159 435 - -
Vifa3g03445 494 FunFam ATP synthase subunit beta 75 157 - -
Vifa3g03445 494 ProSitePatterns ATP synthase alpha and beta subunits signature. 424 433 IPR020003 GO:0005524
Vifa3g03445 494 Pfam ATP synthase alpha/beta family, beta-barrel domain 89 155 IPR004100 GO:0046034|GO:1902600
Vifa3g03445 494 MobiDBLite consensus disorder prediction 55 76 - -
Vifa3g03445 494 MobiDBLite consensus disorder prediction 1 36 - -
Vifa3g03445 494 FunFam ATP synthase subunit beta 158 435 - -
Vifa3g03445 494 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Vifa3g03445 494 Gene3D - 158 431 IPR027417 -
Vifa3g03445 494 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 432 486 - -
Vifa3g03445 494 CDD ATP-synt_F1_beta_N 85 158 - -
Vifa3g03445 494 Gene3D - 432 492 IPR024034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03445 Vifa-Chr3 987273101 987276394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03445 154 492 Primary Pumps ATPases(2) AT1G20260 27.298 3.91e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03445 K02133 - gmx:100789705 737.643