Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03443 ATGGTAATCATTCGTGCAGGTGAAATTAGTAAAATTATCTGTGAACGTATTGATCAATATAATATCAAAGTAAAAATTGTAAATACAGGTACCATACTTCAAGTAGGCGATGGCATTGCTCCTATTTATGGTCTTGATAAAATACCGGTAAGTGAGGGTTATTTGGGTCATGTTGTAAACTCCCTAGCTAAACCTATTGTCGATCGAGGAGAAATTTCAGCTTCAGAATCTCGGTTAATCGAATCTCCCGCTCCTGGTATTATTTCTAGACAGTCCGTGTATGAGCCCCTTCAAGCGGGACTTATTGTTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTGATTATTGGGGACAAACAAATTGGTAAAACAACAATAGCTACAGATACGATTCTCAATCAACAAGGACAAAATGTAGTATATGTTTATGTAGCTATTGGTCAAAAAGCATCTTTTGTGGCTCAAGCCGTAACTTCTTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAACAGCAAATTCCCCAGCTACATTACAATACCTCACGCCTTATACAGGAGCAACTCTGGCTGAATATTTTATGTACAGTGAACGCCACACTTTAATCATTTATGATGATCCCTGCAAACAAGCACGTGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCTGGAGATGTTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCACTAA 762 0.3885 MVIIRAGEISKIICERIDQYNIKVKIVNTGTILQVGDGIAPIYGLDKIPVSEGYLGHVVNSLAKPIVDRGEISASESRLIESPAPGIISRQSVYEPLQAGLIVIDSMIPIGRGQRELIIGDKQIGKTTIATDTILNQQGQNVVYVYVAIGQKASFVAQAVTSLQERGAMEYTIIVAETANSPATLQYLTPYTGATLAEYFMYSERHTLIIYDDPCKQARAYRQMSLLLRRPPGREAYPGDVFLFTFASFGKSH 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03443 253 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 47 243 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g03443 253 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 100 242 IPR000194 GO:0005524
Vifa3g03443 253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 245 IPR027417 -
Vifa3g03443 253 FunFam ATP synthase subunit alpha, mitochondrial 45 249 - -
Vifa3g03443 253 Gene3D - 51 249 IPR027417 -
Vifa3g03443 253 Gene3D - 2 50 IPR023366 -
Vifa3g03443 253 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 56 IPR036121 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03443 Vifa-Chr3 987265609 987266519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03443 47 245 Primary Pumps ATPases(2) AT4G38510 29.493 1.31e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03443 K02111 - csin:14412394 339.347