Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03422 ATGTCAAGCGAAAGAAAAAGTCGAGGTCGTCAAAAGATCGAAATGAAAAAGATGAGCAATGAGAGTAACCTGCAAGTGACTTTCTCAAGACGTCGTAGCAGACTCTTCAAGAAATTCAGTGAACTTTGCACCCTATGTGATGCAGAAATTGCTCTTCTTGTATTCTCACCTAGTGAAAAGGTAATTTCTTTTGGTCACCCCAATATTGATACAGTCATAGATCGTTATCTCTCTCGAGTTCCACCCCAAAACAATGACATCAAGCAATTCATTGAGGCTCATCATAAAGCTAACGTGTGTGAGATCAATGATCAGCTTACTAAAATCAATAACACACTAGATGTTGAAAAGAAGCTTGGTGATGAGCAGAGCCATTCACAAAAAGAATATGAGGCTCAATTTTGGTAG 408 0.3873 MSSERKSRGRQKIEMKKMSNESNLQVTFSRRRSRLFKKFSELCTLCDAEIALLVFSPSEKVISFGHPNIDTVIDRYLSRVPPQNNDIKQFIEAHHKANVCEINDQLTKINNTLDVEKKLGDEQSHSQKEYEAQFW 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03422 135 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g03422 135 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vifa3g03422 135 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifa3g03422 135 MobiDBLite consensus disorder prediction 1 17 - -
Vifa3g03422 135 PANTHER MADS BOX PROTEIN 10 117 - -
Vifa3g03422 135 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa3g03422 135 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa3g03422 135 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa3g03422 135 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vifa3g03422 135 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Vifa3g03422 135 Gene3D - 20 98 IPR036879 GO:0003677|GO:0046983
Vifa3g03422 135 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03422 Vifa-Chr3 983988278 983988685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03422 5 122 Type I MADS-box Gene Family AT5G60440 57.500 2.02e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g03422 SRF-TF 7.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03422 - - mtr:11438274 194.512