Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03420 ATGTCAACTGGAAGGAAAGGTCGAGGTCGCCAAAAGACGGAGATGAAAAAGATGAGTAACGAGAGCCACCTTCAAGTGACTTTTTCAAAGCGTCGTAGTGGACTCTTCAAGAAAGGTAGCGAGCTTTCCATCCTTTGTGGTGTAGATGTTGCTCTTGTTGTATTTTCACCAAGTGGAAAAGTATTTTCTTTTGGTCATCCAAATATTTATACGGTCATAGATCGATATCTTTATGAGATCCCACCCCAAAACAATTACACAATGCAATTTATTCAGGCTCACCGCAGTGCCAACGTGAGCGATCTTAATGCTCAACTAACTCAAATCAACAACAAATTGGATGACGAGAAGAAGTTGGGTGATGAGCTAAGTCGTATCCACAAAGAGGTCGAGGCTCAGTTTTGGTGGGCTTGTCCATTTGATGGTATGAATATGACTCAACTTGAATTATTAAAGAAAGCTTTGGAGCAGCTTAAGATTCTTGTTGCTGAACATGCTGACAAGGTTTTAATTCAGGGTGATCATACTCAAATTCTTCCAGCTTTTGTTGGCAATGCTTCATCTTCTAACATCTATCTCCATCATCAGCCAAATCCTCAACAAGCTCAAATGTTTCAACCATAA 624 0.4022 MSTGRKGRGRQKTEMKKMSNESHLQVTFSKRRSGLFKKGSELSILCGVDVALVVFSPSGKVFSFGHPNIYTVIDRYLYEIPPQNNYTMQFIQAHRSANVSDLNAQLTQINNKLDDEKKLGDELSRIHKEVEAQFWWACPFDGMNMTQLELLKKALEQLKILVAEHADKVLIQGDHTQILPAFVGNASSSNIYLHHQPNPQQAQMFQP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03420 207 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vifa3g03420 207 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Vifa3g03420 207 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vifa3g03420 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vifa3g03420 207 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa3g03420 207 PANTHER MADS BOX PROTEIN 10 162 - -
Vifa3g03420 207 Coils Coil 148 168 - -
Vifa3g03420 207 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa3g03420 207 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa3g03420 207 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa3g03420 207 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifa3g03420 207 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Vifa3g03420 207 MobiDBLite consensus disorder prediction 1 24 - -
Vifa3g03420 207 Coils Coil 99 119 - -
Vifa3g03420 207 Gene3D - 89 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03420 Vifa-Chr3 983480461 983481084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03420 5 190 Type I MADS-box Gene Family AT5G60440 49.206 1.41e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g03420 SRF-TF 9.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03420 - - mtr:11438274 290.812