Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03419 ATGGGGGATCACTTTGATTTACTGGTTGATCGATTGCTTACGGAATCGACGTTAGAGGCTGCGATTGAAAGCGGAAAGCGGGCGATGCAGGCTGCGTCTTCCGTGGTGGTGAATGACACGGAGATTGATCTGTCTTTGTTGAAGGTGGGTTTGGAGAGTGTCAAATGTTCGGGGAAGATGGTGGAATGTAGGATATGTCATGATGATGATGATGATTCAAATATGGAGACACCTTGCTCTTGTTGTGGTAGTTTGAAGTACGCACACCGAAGATGTATACAACGGTGGTGCAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCCGTTCAAACCTGATTATACAGCTCCTCCTCCACTATTTCAATTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAAATTTCGCGAAGAGACTTGAATAGTACTCATTTAGTTAGCATGGTTCCCTCTGACCAAAGCCTTAACAATTCTAACTACGATCAATATTCCGCCCCTTCTTCAGGAAGTTTGATATGCTGTCGCTCGGTTGCTATCATTTTCATGGTTCTGTTGATTTTAAGACATACACTTCCCCTACTAATTAGTGGAAGCAAAGACTTTTATTTCCCGCTTTTCATGGTGTTATTATTTCGAAGTGCTGGAATTGTCGTACCTATATACTTCATGGTTAGAGCAGTGGCACTAATCCAGCGACATCGGAGACAACATCGAGAGCATCCTAGTGTCTTGGTAAGTTCATCGGATGATGAAATCGATCAAGAAGGTTTGCAGCCTCAACCTCATATCATACATTTAGTGTAA 813 0.4342 MGDHFDLLVDRLLTESTLEAAIESGKRAMQAASSVVVNDTEIDLSLLKVGLESVKCSGKMVECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPDYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPSDQSLNNSNYDQYSAPSSGSLICCRSVAIIFMVLLILRHTLPLLISGSKDFYFPLFMVLLFRSAGIVVPIYFMVRAVALIQRHRRQHREHPSVLVSSSDDEIDQEGLQPQPHIIHLV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03419 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 119 IPR013083 -
Vifa3g03419 270 Pfam Protein of unknown function (DUF3675) 114 230 IPR022143 -
Vifa3g03419 270 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Vifa3g03419 270 SMART ringv_2 62 109 IPR011016 GO:0008270
Vifa3g03419 270 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Vifa3g03419 270 CDD RING_CH-C4HC3_MARCH 63 109 - -
Vifa3g03419 270 MobiDBLite consensus disorder prediction 243 263 - -
Vifa3g03419 270 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 240 IPR033275 -
Vifa3g03419 270 FunFam Zinc finger family protein 52 118 - -
Vifa3g03419 270 SUPERFAMILY RING/U-box 61 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03419 Vifa-Chr3 983165268 983166856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03419 62 109 C3H Transcription Factor Family AT2G37950 45.098 1.78e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03419 - - vun:114190540 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03419 3 983165268 983166856 Vifa3g03419 3 983165268 983166856 ECH