Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03413 ATGATGTTTTATAACGACATTGCTCAGTCACCACCGCCCGGACGTTCAGCCATCGTCTCCCGTCTAAGTGTTGTGAAAAGTGAGATGGGGACCAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAAGGGTTACCGCTAAAATTAAGCCATCTGAGGGTGCTGATTTTTTGCCATTGGCGGGTGGTCCGGGTCGCAAGCTTCCTGAACTTAAACCTCTGGAGAATACTTCACCTGTTTTGTACATTGGTAGAATTCCACATGGCTTCTATGAGAAGGAGATGGAAGCTTATTTTGCACAATTTGGAACCATCAAGAGATTGAGAATAGCCAGAAATAAAAAGACCGGAAAATCCAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTTGCAAAAATTGTTGCTGATACTATGCACAATTATTTGCTTTTCGAACACCTTCTTCAGGTTTATGTGATACCTTTAGAAAATGTTCATCCAAGATTATGGAAAGGATTCAATTACCGTTACAAGCCCTTGGACTCTCTCCAAATTGAACGAGAGCGACATGACAAGGAAAGGACACTGGAAGAACACAAAAAGTTGGTTGACAGGGTTATGAAACGTGACAAAAAACGCCGGAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGTCCCGAGATTGTGGGTAACCTCCAGCCTGCTCCAAAGAAGATAAAGTTCGAAGACTGA 717 0.424 MMFYNDIAQSPPPGRSAIVSRLSVVKSEMGTKAKKAMKKNMKRVTAKIKPSEGADFLPLAGGPGRKLPELKPLENTSPVLYIGRIPHGFYEKEMEAYFAQFGTIKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPLENVHPRLWKGFNYRYKPLDSLQIERERHDKERTLEEHKKLVDRVMKRDKKRRKRIEAAGIDYECPEIVGNLQPAPKKIKFED 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03413 238 Gene3D - 25 153 IPR012677 -
Vifa3g03413 238 CDD RRM_NIFK_like 79 151 - -
Vifa3g03413 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 151 IPR000504 GO:0003723
Vifa3g03413 238 SMART rrm1_1 79 152 IPR000504 GO:0003723
Vifa3g03413 238 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 33 237 - -
Vifa3g03413 238 SUPERFAMILY RNA-binding domain, RBD 79 223 IPR035979 GO:0003676
Vifa3g03413 238 Coils Coil 179 199 - -
Vifa3g03413 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03413 80 151 Eukaryotic Initiation Factors Gene Family AT1G71770 30.556 5.18e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03413 K14838 - gmx:100778780 337.035