Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03409 ATGGTGGTTTTTGGCGGGAAAAAGGTGAAGCAATTTGTCACCGGATTTGGCGGCAACGGCCTTGGCCAGATAGTCGCCGCCGTCGCTGTTTCCTTCCTTGTTCGAATCTTCTCCTCTCCCGGTCCCGCTCTCTTGCCGGAGAACGACGATGATGACGGTGTTCCGAGTAGCGATTCCCCCGACGGTGAAACTCCTACTCCCTCCGGAAAGGTCACGCCGGTTACAATTCGCTGGAATAGTATTAATTGTTCGGTATCTGATAAATCCTCCAAGTCTGTGAGATTTCTGCTTAAAAATGTGAGCGGAGAAGCAAAACCTGGAAAATTATTAGCCATAATGGGGCCTTCAGGTTCAGGGAAGACAACATTGCTCAATGTTCTTGCCGGTCAGCTGGCAGCTTCGCCTCGGCTTCATTTGAGTGGCCTTTTGGTATTCAATGGAAAACCTAGTTCTAGGAATAGTTACAAGTTTGCTTACGTGAGACAGGAGGATCTCTTCTTCTCACAGCTTACTGTGAGGGAAACACTGTCTCTTGCTATAGAGCTACAGCTTCCCAATATATCTTCTGTTGAAGAGAGGGATGAACATGTCAACAATCTCCTATTCAAGCTAGGCTTGGTCAGTTGTGCCGATACTAATGTTGGTGATGCCAAAGTTCGTGGAATAAGTGGTGGTGAAAAGAAACGTTTATCCTTGGCATGTGAACTGCTTGCAACCCCATCTGTTATTTTTGCCGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTTATGGAAACTCTCCGACAACTTGCACTCGATGGTCATACAGTAATATGCTCTATACATCAGCCAAGAGGTTCAGTGTACAGCAAATTCGATGACATTGTCTTGCTAACTGAAGGTTCACTTGTTTATGCTGGTCCTGCTCGCGATGAACCGTTGGAGTACTTCTCCAAATTCGGGTACCACTGCCCAGATCATGTAAATCCTGCAGAATTTTTGGCCGATCTTATATCCATAGACTACAGTTCTTCTGACAGTGTCCATTCTTCTAAAAAAAGGATCGATGGGCTTGTTGAGTCCCTCTCACAAAAACTATCCACAACAATACATGCAACTCCAATTACTATAGACGACCTCTCGAAAAGTAGAAAGAGAATCAGCAAGAGGACTATAGCAAAAAGGAAAGGAGGATGGTGGAAGCAATTCTGGTTGCTTCTTAGACGGGCATGGATGCAGGCTTCCCGAGATGCACCTACCAACAAAGTTCGGGCGAGGATGTCAATTGCTTCAGCAGTTATCTTTGGGTCAGTTTTTTGGAGGATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGAATGCTTCAGGTTGCTGCAATAAACACAGCTATGGCTGCTCTCACAAAGACTGGAGGTGTGTTTCCAAAGGAACGGGCAATTGTTGATAGAGAACGTGCTAAAGGCTCATATTCTTTGGGCCCCTATCTGTTTTCGAAACTGTTGGCTGAGATTCCAATTGGAGCAGCATTTCCATTAATGTTCGGAGCTGTTTTGTACCCAATGGCACGTCTCCATCCTACTTTGATGAGATTTGGGAAATTCTGTGGAATCGTTACTGCTGAGTCTTTTGCTGCATCTGCGATGGGTCTTACTGTTGGTGCTATGGTTCCAACTACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTTTTTATAGTATTTGGTGGCTACTATGTTAACCCGGAGAATACCCCGATTATCTTCCGCTGGATTCCTAGTGTTTCTCTGATAAGATGGGCCTTTCAAGGACTTTGCATCAATGAATTTCGTGGTCTTCAATTTGATCACCAGCATTCATTTGATATTCAAACTGGAGAACAGGCCCTAGAGCGTCTTTCCTTTGGAAAAAGTACGATTAGAGATACGCTGCTAGCGCAAAATAGAATATTGTTATTTTGGTATTGTACCACCTACCTTCTCCTTGAGAAAAACAAGCCCAAATACCAGCAACTTGAAACAACCCCTCCCGACCACGAAAACCTGCATTTAAAACTTGAGGAGTTCAATTCGGAACTAGCTGATCAGACATATGAAGCACCAGAGGTCAGCCAAGTTGGTTCCGACGAGCCCCTTGAGTCACCTGAAGTAGACCCTGTTGGCTCTTTTATCCTAGAAGGTGCTCAGTAG 2187 0.4518 MVVFGGKKVKQFVTGFGGNGLGQIVAAVAVSFLVRIFSSPGPALLPENDDDDGVPSSDSPDGETPTPSGKVTPVTIRWNSINCSVSDKSSKSVRFLLKNVSGEAKPGKLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGLLVFNGKPSSRNSYKFAYVRQEDLFFSQLTVRETLSLAIELQLPNISSVEERDEHVNNLLFKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLATPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVYSKFDDIVLLTEGSLVYAGPARDEPLEYFSKFGYHCPDHVNPAEFLADLISIDYSSSDSVHSSKKRIDGLVESLSQKLSTTIHATPITIDDLSKSRKRISKRTIAKRKGGWWKQFWLLLRRAWMQASRDAPTNKVRARMSIASAVIFGSVFWRMGKSQTSIQDRMGMLQVAAINTAMAALTKTGGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGAVLYPMARLHPTLMRFGKFCGIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSVSLIRWAFQGLCINEFRGLQFDHQHSFDIQTGEQALERLSFGKSTIRDTLLAQNRILLFWYCTTYLLLEKNKPKYQQLETTPPDHENLHLKLEEFNSELADQTYEAPEVSQVGSDEPLESPEVDPVGSFILEGAQ 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03409 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 322 IPR003439 GO:0005524
Vifa3g03409 728 Pfam ABC-2 type transporter 399 609 IPR013525 GO:0016020|GO:0140359
Vifa3g03409 728 MobiDBLite consensus disorder prediction 44 72 - -
Vifa3g03409 728 Pfam ABC transporter 97 249 IPR003439 GO:0005524
Vifa3g03409 728 SMART AAA_5 106 299 IPR003593 GO:0016887
Vifa3g03409 728 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 66 627 - -
Vifa3g03409 728 ProSitePatterns ABC transporters family signature. 222 236 IPR017871 GO:0005524|GO:0016887
Vifa3g03409 728 Pfam ABC-2 type transporter 279 345 IPR043926 GO:0140359
Vifa3g03409 728 MobiDBLite consensus disorder prediction 696 720 - -
Vifa3g03409 728 FunFam ABC transporter G family member 7 74 312 - -
Vifa3g03409 728 Coils Coil 724 728 - -
Vifa3g03409 728 CDD ABCG_EPDR 73 304 - -
Vifa3g03409 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 308 IPR027417 -
Vifa3g03409 728 Gene3D - 71 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03409 Vifa-Chr3 979359025 979366192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03409 96 316 Calmodulin-binding Proteins AT2G36910 29.333 1.32e-11 66.2