Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03398 ATGGGGTTCCCTGCCGGTGACATGAGCTCCGGGTTTTTTGGTTATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAGACTAACCATAAGGATAAATACAAAGTGTATAATCTCTGTTTGGAGCGGCTGTACGATGCATCTTTGTTTGAGGGGAAGGTGGCCAGCTTCCCATTTGATGATCATAATTGCCCACCGATTCAACTGATTGTATCATTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTGGTGGTTGTCCACTGTAAAGCGGGAATGGCCAGGACCGGGTTGATGATTTCCAGTCTTCTACTATTCTTAAAGTTCTTCCCAACTGCCGAGGAGTCGATGGATTATTATAATCAGAAAAGATGTATTGATGGAAAAGGACTTGTTCTGCCCAGTCAGATTAGGTATGTCAAGTATTTTGAACGGATCTTGACTTACTTTAATGGCGAGTGTCCACCTCCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGTCCTTACTGGATCCGGCCCTCTATAACCATTTCAAATCATAATGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAAGATCTTTTGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGAGTTATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTCACAGAGTTGGCTGGTGACTTCAAAATTCACTTTCATGACCGACAAGGAGATTTTTACTGTTGGTTAAACACAACTATGACAGAAAACAGGAAAGTTTTGACCACCAGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTCCAGGTTGAGGTTGTGCTGGTGGATTACAATGGCAATGTTGTAACTTCCAACCCTGAAGCTACAAAGAAATCAGACGAGAGTTCAAGTAAAAGTCCTGCCCCAGCTGAAACGAGCACCCCCGTACCAAATGCAGACAAAGAGTCAGGGGATGGTGATCAAGACAAAGATGATGATGTATTTTCAGATGGTGAGGCAGAGCATCCCGCTTCTTCAAGAAGCAAGCAAACAAAGGCACCTTCCGAAGCAGATGTAACAGTTGCAAGTGCCACCAAAGAGTCCGAGGCAAACAAAAATTCAAATCAAATAACAAATATAACTCATGCAACAGAACAAGTTTCTTTGGGTAGTAAGAACTCTACACCAAGTCATAGTACTGGTGAGCGGAAGAATGATGTTGGTGGAAAAACTGTGTCCAGTCTCGACGGATCCAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTGTTTACATTCGGAGATGATGAAGACTATGAAAGTGATTGA 1365 0.43 MGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETNHKDKYKVYNLCLERLYDASLFEGKVASFPFDDHNCPPIQLIVSFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERILTYFNGECPPPRRCMLRGFRLHRCPYWIRPSITISNHNGVLFSTKKHPRTKDLLPEDFWFTAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLTTSDLDGFDKRKLPSPGFQVEVVLVDYNGNVVTSNPEATKKSDESSSKSPAPAETSTPVPNADKESGDGDQDKDDDVFSDGEAEHPASSRSKQTKAPSEADVTVASATKESEANKNSNQITNITHATEQVSLGSKNSTPSHSTGERKNDVGGKTVSSLDGSSSESEFKAMAADASVFTFGDDEDYESD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03398 454 CDD PTP_PTEN 1 155 IPR045101 GO:0016791
Vifa3g03398 454 ProSiteProfiles Phosphatase tensin-type domain profile. 1 159 IPR029023 -
Vifa3g03398 454 ProSitePatterns Tyrosine specific protein phosphatases active site. 96 106 IPR016130 GO:0016311|GO:0016791
Vifa3g03398 454 Gene3D Protein tyrosine phosphatase superfamily 1 162 IPR029021 -
Vifa3g03398 454 Gene3D - 166 293 - -
Vifa3g03398 454 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 409 - -
Vifa3g03398 454 SMART PTEN_C2_2 164 292 IPR014020 -
Vifa3g03398 454 MobiDBLite consensus disorder prediction 356 411 - -
Vifa3g03398 454 ProSiteProfiles C2 tensin-type domain profile. 166 293 IPR014020 -
Vifa3g03398 454 MobiDBLite consensus disorder prediction 299 454 - -
Vifa3g03398 454 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 1 162 - -
Vifa3g03398 454 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 236 290 IPR035892 -
Vifa3g03398 454 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 9 162 IPR029021 -
Vifa3g03398 454 MobiDBLite consensus disorder prediction 299 328 - -
Vifa3g03398 454 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 94 133 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03398 Vifa-Chr3 974267231 974274441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03398 1 454 Protein tyrosine phosphatase (PTP) family AT3G19420 70.130 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03398 K01110 - gmx:100784003 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03398 3 974267231 974274441 Vifa3g03398 3 974267231 974274441 ECH
Vifa1g07280 1 1123631038 1123636115 Vifa3g03398 3 974267231 974274441 PCT