Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03397 ATGGCAATCCATCACCACCACCACCACCACCATCACCACCACAACCAAACCGTTTCATCTCTTCTCGACGCTCTTTACTGCGATGAAGAAAAACTCGAAGAAGAAGAAGACGTTTCATCTCCACAAAGTGATATCACAACTAACAATGAAGAACATGTTCTAGACTTCACTTCGCTTTCTCCTCTTCTTTCCTTGGAACAAAACCTCTTCTCTCAAGATGAAGAACTCTCCACGCTTTTCTACAAAGAAAAAACCCAACTACAAACTTACTACGAGGATCTGAAGAAAAATGTCGTCGATTTTGTTTCTCTCTCTCAACCTCGTCGTGAAGCTGTTCAATGGATGCTTAAAGTCAATGCTCATTACGCCTTTTCACCTCTCACCGCAACACTCGCTGTTACATATTTCGACAGGTTCCTCTTAACCTTCCTTTTCCAAAAGGATAAGCCATGGATGATTCAGCTTGTTGCTGTTACTTGCATCTCTCTAGCTGCAAAAGTTGAAGAAACTCAAGTTCCTCTCCTCCTAGACCTTCAAGTGCAAGATACTAAATATGTGTTTGAAGCAAAAACTATTCAGAGAATGGAGCTTTTGATTTTGTCTACACTGAAATGGAAGATGCATCCAGTGACACCACACTCTTTTCTAGATCATATTATAACAAGGCTTGGTTTGAAAACTAATCTTCATTGGGAGTTTTTAAGACGCTGTGAGAATCTTCTTCTATCTGTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCTTCTGTGTTGGCTACTGCTACAATGCTGCATGTGATAGACCAGATTGAAGAGAGTGATGATAATGGTGTGGACTACAAAAACCAGCTTCTTAATATTCTCAAAATTAATAAGGAGAAAGTGGATGAATGTTATAATGTGATTGTTGAGGTTACTAATGGAAGTAATTATGGTCATAAACGAAAATATGAACAAGTTCCTGGAAGTCCAAGTGGCGTAATTGATGCTGTTTTTAGTTCTGATGGTTCTAATGATTCATGGAAAGTGGGTTCATCTTCATCGTATTCAACCTCAGAGCCTGTTTTTAAGAAAACAAAAACTCAAGGGCAAAATAGGAATTTGTCACCTCTTAATAGGGCAATTGTTGGAATTCTTGCCACTGCTAGTGCTACCTCTCCTTAA 1164 0.3892 MAIHHHHHHHHHHHNQTVSSLLDALYCDEEKLEEEEDVSSPQSDITTNNEEHVLDFTSLSPLLSLEQNLFSQDEELSTLFYKEKTQLQTYYEDLKKNVVDFVSLSQPRREAVQWMLKVNAHYAFSPLTATLAVTYFDRFLLTFLFQKDKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTPHSFLDHIITRLGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEESDDNGVDYKNQLLNILKINKEKVDECYNVIVEVTNGSNYGHKRKYEQVPGSPSGVIDAVFSSDGSNDSWKVGSSSSYSTSEPVFKKTKTQGQNRNLSPLNRAIVGILATASATSP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03397 387 ProSitePatterns Cyclins signature. 108 139 IPR006671 -
Vifa3g03397 387 Gene3D - 105 208 - -
Vifa3g03397 387 Pfam Cyclin, N-terminal domain 103 207 IPR006671 -
Vifa3g03397 387 CDD CYCLIN_AtCycD-like_rpt2 210 302 - -
Vifa3g03397 387 Pfam Cyclin, C-terminal domain 210 318 IPR004367 -
Vifa3g03397 387 CDD CYCLIN_AtCycD-like_rpt1 108 205 - -
Vifa3g03397 387 MobiDBLite consensus disorder prediction 336 364 - -
Vifa3g03397 387 PANTHER CYCLINS 74 310 IPR039361 -
Vifa3g03397 387 FunFam D3-type cyclin 101 208 - -
Vifa3g03397 387 Gene3D - 209 300 - -
Vifa3g03397 387 FunFam CYCLIN D32 209 300 - -
Vifa3g03397 387 SMART Cyclin_C_2 210 326 IPR004367 -
Vifa3g03397 387 SUPERFAMILY Cyclin-like 72 208 IPR036915 -
Vifa3g03397 387 SMART cyclin_7 113 201 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03397 Vifa-Chr3 974260342 974261979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03397 1 305 Core Cell Cycle Gene Families AT4G34160 54.248 1.37e-105 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03397 K14505 - gmx:547740 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03397 3 974260342 974261979 Vifa3g03397 3 974260342 974261979 ECH
Vifa2g03640 2 1060478359 1060479702 Vifa3g03397 3 974260342 974261979 ECH