Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03386 ATGATGAAACTGAAACTTGACACCCTTTTGAGAGTTTCATCTTTTTTTGTTCTTTTACTTCTTCAATACTCAGTTGCTCTTAACTCTGATGGAATTTTCCTGCTGAAATTTAGATACTCCATCCTCAGTGACCCTTTATCAGTCTTTGAAAACTGGAACTATGATGATGAAACTCCATGTTCATGGCATGGAATTGCATGTAGTGAACTAGGATCTCCTAATACACCTGACTTCTTCAGAGTAACTAGCTTGATTCTTCCTAATAGCCAACTTCTTGGTTCCATTGCAGAAGATTTAGGCTTTATTCAAAACCTTCATCACATTGATCTCTCAAACAATTTCCTCAATGGTTCATTACCAAACTCTATCTTCAACTCTTCTCAGCTTCAATTCCTTTCACTCTCCAACAATGTCATCTCAGGTAAACTACCTGAGTTGGTTGGTTTATCAACAAACCTACAAATTCTCAACCTTTCTGAGAATGCCTTTGCTGGGTCAATCCCAGAAAACCTCACTTCTCTACAGAATCTAACCATTGTTTCCCTCAAAAGTAACTATTTTTCTGGTGAAATCCCAAATGGGTTTAACTCTGTTGTGATTCTAGATCTGTCCTCAAATCTACTCAATGGTTCTCTCCCAAATACTTTCCAAGGCGAAAATCTTCAATACTTGAATCTCTCTTATAATAAACTCTCAGGAGCAATTCCACAAACATTTACAAGGCACATTCCTGAAAAATCTACCATTGATCTCTCATTCAACAACCTAACAGGACCAATACCTGAATCTTTGTTCAATCAAAAAACAGAATCACTCTCTGGAAACTCTGATCTTTGTGGAAAACCTCTGAAGATTCTTTGTACTATTCCATCTACTAAGTCTATTGCACCACATATCACAAACTCATCTTCACCAGCAATTGCTGCCATACCAATAACAATCGACTCAGGAAATAACACAAACACAACAACTACAACAACAACTGGTGGTGGTTCTCAGAATGGTCTAAAACCTGCTACAATAGCAGCCATTGTTGTTGGAGACATAGCAGGCATGGGAATTTTAGCTCTTATAGTTCTTTTTGTATATCAACAAAGAAAGAAAAGATATCCAAAATCAACCACTGTACTTCAGGAGAAGAATGTATCAGAAACTGTAGCTAAACAAGAACAACAATCTCTGAAAACACACTCACTTCAATGTTCTTCATGCTGTTTAACAGTTAAACAGCAAGAAGAAACATCAGAAGCAACGACTTCTGATGACAGTGACCGCGACATCGGGAACCTTCCAAAAGAAGGCACACTGGTAACTGTGGACGGCGAGACTAAGATGGATTTAGAAACATTATTGAAGGCTTCAGCTTATATACTTGGAACAAGCCGTGCAAGTATTGTGTATAAAGCAGTGTTGCAGGATGGAAGAGTTTTTGCTGTTAGAAGGATCGGAGAATGTCGCGTTGAAAGAATGAAAGAGTTTGAGAATCAAGTTAGAGTTATCGCAAAGATTCGTCATCCTAATTTGGTTAAGATTCGTGCTTTCTGTTGGGGTCAAGATGAGAACCTTGTTATCTCTGATTTTGTTCCTAATGGCAGCCTCTCTTCTATTGGTTACAGGAGAGGAGGTTTGTCTCCGATAAACTTATCTTTGGAAATGCGGTTGAAGATAGTGAAAGGGGTGGCGAGAGGACTTGCTTACATTCATGAAAAGAAACATGTGCATGGAAATGTTAAACCAAGCAACATTTTATTAAATTCAGAAATGGAACCTATTGTAAGTGATTTTGGACTTGATTTGCTTCTTTTGAATGATATCAACCATAGAGGAAACGGTTCAGCTAGACAATTAGTGAACCAGAAAACCCAACAACAACAAGAGTTTCTCGTTGGTTCGACTCCAAGTCCGTATACGACAATGGGGTCATCGTCGTCTACGAGCTGTGGTGGTGGTCAAGTACAACAATATCAAGCGCCGGAGTCTTTTCAAAACATAAAACCAAACGCTAAAATGGATGTGTATTCATTTGGGGTTGTTTTGTTGGAGCTTTTTAGTGGGAGGGTTTTCTCGGACCGGGAATTGGACCAGTGGTCTGTTCCGGCCGGTTTGGTCGAAGAGGAGAAAAACCGGGTTTTGAGGTTGGCTGACGTGGCGATTAAACACGAGATAGAAGGTAGAGAAAATGTAGTGTTCACGTGTTTCAAGTTGGGGTTAAATTGTGTTTCTATTGTCGCACAAAAGAGACCGTCCATGAAAGAAGCACTACAAATTTTAGAGAAGGTTTAG 2283 0.3916 MMKLKLDTLLRVSSFFVLLLLQYSVALNSDGIFLLKFRYSILSDPLSVFENWNYDDETPCSWHGIACSELGSPNTPDFFRVTSLILPNSQLLGSIAEDLGFIQNLHHIDLSNNFLNGSLPNSIFNSSQLQFLSLSNNVISGKLPELVGLSTNLQILNLSENAFAGSIPENLTSLQNLTIVSLKSNYFSGEIPNGFNSVVILDLSSNLLNGSLPNTFQGENLQYLNLSYNKLSGAIPQTFTRHIPEKSTIDLSFNNLTGPIPESLFNQKTESLSGNSDLCGKPLKILCTIPSTKSIAPHITNSSSPAIAAIPITIDSGNNTNTTTTTTTGGGSQNGLKPATIAAIVVGDIAGMGILALIVLFVYQQRKKRYPKSTTVLQEKNVSETVAKQEQQSLKTHSLQCSSCCLTVKQQEETSEATTSDDSDRDIGNLPKEGTLVTVDGETKMDLETLLKASAYILGTSRASIVYKAVLQDGRVFAVRRIGECRVERMKEFENQVRVIAKIRHPNLVKIRAFCWGQDENLVISDFVPNGSLSSIGYRRGGLSPINLSLEMRLKIVKGVARGLAYIHEKKHVHGNVKPSNILLNSEMEPIVSDFGLDLLLLNDINHRGNGSARQLVNQKTQQQQEFLVGSTPSPYTTMGSSSSTSCGGGQVQQYQAPESFQNIKPNAKMDVYSFGVVLLELFSGRVFSDRELDQWSVPAGLVEEEKNRVLRLADVAIKHEIEGRENVVFTCFKLGLNCVSIVAQKRPSMKEALQILEKV 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03386 760 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 81 759 - -
Vifa3g03386 760 FunFam Leucine-rich repeat receptor-like protein kinase 197 289 - -
Vifa3g03386 760 Gene3D Phosphorylase Kinase; domain 1 432 527 - -
Vifa3g03386 760 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
Vifa3g03386 760 Gene3D Ribonuclease Inhibitor 196 289 IPR032675 -
Vifa3g03386 760 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515
Vifa3g03386 760 Pfam Leucine Rich Repeat 104 123 IPR001611 GO:0005515
Vifa3g03386 760 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vifa3g03386 760 Gene3D Ribonuclease Inhibitor 27 195 IPR032675 -
Vifa3g03386 760 FunFam Leucine-rich repeat receptor-like protein kinase 27 193 - -
Vifa3g03386 760 ProSiteProfiles Protein kinase domain profile. 452 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03386 760 Pfam Protein kinase domain 458 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03386 760 MobiDBLite consensus disorder prediction 630 651 - -
Vifa3g03386 760 SUPERFAMILY Protein kinase-like (PK-like) 457 757 IPR011009 -
Vifa3g03386 760 Gene3D Transferase(Phosphotransferase) domain 1 528 760 - -
Vifa3g03386 760 CDD TM_EGFR-like 340 369 - -
Vifa3g03386 760 SUPERFAMILY L domain-like 33 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03386 Vifa-Chr3 971359719 971362102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03386 26 760 Receptor kinase-like Gene Family AT2G15300 48.892 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa3g03386 Pkinase 7.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03386 - - gmx:100820334 978.778