Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03380 ATGGGTAGTCTTGAAGTTGCTGAAAGAACAACAGTTGGTTTGGCTGCAACTGACCCTTCCGGAATTCTAACTCCGTATACTTACACTCTTAGAAACACCGGTCCAGATGATGTTTACATCAAAATTTACTACTGTGGAGTCTGCCATTCTGATCTTCACCAAATCAAAAATGACCTTGGCATGTCCAATTATCCCATGGTCCCCGGGCATGAAGTGGTTGGTGAGGTACTAGAGGTGGGATCTAATGTTAGCAGATTCAGTGTGGGAGAAATAGTGGGAGTTGGACTTCTTGTTGGATGCTGTAAAAACTGCAGGGCTTGTGATTCTGATATTGAACAATATTGTAACAAGAAGATCTGGTCTTACAATGATGTTTATACCGATGGAAAAATCACTCAGGGTGGTTTCGCCGAAACAACCGTTGTTGAACAGAAGTTTGTGGTGAAAATTCCAGAGGGATTGGCACCAGAGCAAGCTGCACCATTGTTATGTGCTGGTGTGACAGTGTACAGTCCACTAGCACATTTTGGGCTGAAACAAAGTGGGCTACGAGGTGGAATATTGGGCCTGGGAGGTGTAGGACACATGGGGGTGAAAGTAGCAAAAGCATTGGGTCACCATGTGACTGTGATAAGCTCTTCTGATAAGAAGAAGAAAGAAGCAATTGAGGATCTTGGAGCTGACAGTTATGTTGTTAGCTCAGACACAACTGCCATGCAAGAAATTGCTGATTCGCTTGATTATATTATTGATACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTGCATTGCTTAAAGTTGATGGAAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTTACACCTATGGTCATGCTAGGGAGGAAGACAATTACTGGAAGCTTTGTTGGGAGTGTGAAGGAGACAGAGGAAATGTTGGAGTTTTGGAAAGAGAGGGGTTTAACCTCCATGATTGAAATTGTGACTATGGATTACATTAACAAAGCTTTTGAAAGATTGGAGAAGAATGATGTGAGGTATAGGTTTGTTGTGGATGTGAAAGGAAGTAAGCTTGAGCAGTGA 1077 0.4243 MGSLEVAERTTVGLAATDPSGILTPYTYTLRNTGPDDVYIKIYYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVSRFSVGEIVGVGLLVGCCKNCRACDSDIEQYCNKKIWSYNDVYTDGKITQGGFAETTVVEQKFVVKIPEGLAPEQAAPLLCAGVTVYSPLAHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEAIEDLGADSYVVSSDTTAMQEIADSLDYIIDTVPVGHPLEPYLALLKVDGKLILMGVINTPLQFVTPMVMLGRKTITGSFVGSVKETEEMLEFWKERGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKLEQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03380 358 PANTHER ALDEHYDE REDUCTASE 10 353 IPR047109 GO:0016616
Vifa3g03380 358 Pfam Alcohol dehydrogenase GroES-like domain 35 150 IPR013154 -
Vifa3g03380 358 FunFam Putative cinnamyl alcohol dehydrogenase 6 322 351 - -
Vifa3g03380 358 Gene3D - 15 351 - -
Vifa3g03380 358 Gene3D - 165 321 - -
Vifa3g03380 358 CDD CAD1 12 350 IPR047109 GO:0016616
Vifa3g03380 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vifa3g03380 358 Pfam Zinc-binding dehydrogenase 192 313 IPR013149 -
Vifa3g03380 358 SUPERFAMILY GroES-like 17 182 IPR011032 -
Vifa3g03380 358 SMART PKS_ER_names_mod 21 349 IPR020843 GO:0016491
Vifa3g03380 358 FunFam probable cinnamyl alcohol dehydrogenase 14 171 - -
Vifa3g03380 358 FunFam Cinnamyl alcohol dehydrogenase 165 321 - -
Vifa3g03380 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03380 Vifa-Chr3 970317949 970320078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03380 1 356 Monolignol Biosynthesis Gene Families AT3G19450 77.528 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03380 K00083 - gmx:100777558 616.305