LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g03370	ATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGTAAGAGCCCGATGTCAATATGATTCTCTCCTAGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGAGGGATGATTTCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTAACAGTTAAAGACAAGCCTCTAACTTTCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGGTTCAATGGAATTCCAGAGGTCAACCAATCAAGCATAATAGCAAGACTTTTGCTAGTTTCATTGGTGTCACAGTTCGTCGGAGAAGTTAA	873	0.4215	MYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLVRARCQYDSLLGVGYLHENKPSPIIHRDLEPSNILRDDFGHLKVADFGVSKLLTVKDKPLTFQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEVQWNSRGQPIKHNSKTFASFIGVTVRRRS	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g03370	290	SMART	serkin_6	103	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g03370	290	SUPERFAMILY	HCP-like	72	164	-	-
	Vifa3g03370	290	Gene3D	Tetratricopeptide repeat domain	71	167	IPR011990	GO:0005515
	Vifa3g03370	290	Gene3D	Tetratricopeptide repeat domain	1	70	IPR011990	GO:0005515
	Vifa3g03370	290	FunFam	ERAD-associated E3 ubiquitin-protein ligase component HRD3A	1	74	-	-
	Vifa3g03370	290	Gene3D	Transferase(Phosphotransferase) domain 1	168	285	-	-
	Vifa3g03370	290	ProSiteProfiles	Protein kinase domain profile.	1	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g03370	290	SUPERFAMILY	HCP-like	1	87	-	-
	Vifa3g03370	290	SUPERFAMILY	Protein kinase-like (PK-like)	168	265	IPR011009	-
	Vifa3g03370	290	Pfam	Sel1 repeat	1	33	IPR006597	-
	Vifa3g03370	290	Pfam	Sel1 repeat	36	68	IPR006597	-
	Vifa3g03370	290	Pfam	Sel1 repeat	111	142	IPR006597	-
	Vifa3g03370	290	Pfam	Sel1 repeat	72	106	IPR006597	-
	Vifa3g03370	290	PANTHER	ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED	1	167	IPR044623	GO:0030433
	Vifa3g03370	290	Pfam	Protein kinase domain	175	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g03370	290	SMART	sel1	35	70	IPR006597	-
	Vifa3g03370	290	SMART	sel1	108	143	IPR006597	-
	Vifa3g03370	290	SMART	sel1	71	107	IPR006597	-
	Vifa3g03370	290	SMART	sel1	1	34	IPR006597	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g03370	Vifa-Chr3	968613420	968616305	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g03370	165	262	MAP Kinase Kinase Kinase	AT4G18950	72.727	6.51e-41	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Vifa3g03370		Pkinase	3.6e-21	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g03370	K14026		-	psat:127101456	343.199