Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03358 ATGGCGGCTGCAATGGTAGCAGAGGCCAGAAAAGCACCGCGACCGGGTAAAGGAGGCTTCGAAGGCCACGGCCTCACCGAAGAAGAAGCGCGCGTGCGAGCGATAGCAGAGATCGTGAACTCCATGGTCGACCTATCTCACAAAGGCCACAAAGTGGATCTCAACGCTCTCAAATCCGCCGCGTGCCGTAAGTACGGCCTCTCACGCGCCCCCAAACTCGTCGAGATGATCGCCGCTTTACCTGACTCCGAACGAGAGGTTCTCCTTCCTAAGCTTCGAGCTAAACCCGTCCGAACTGCTTCTGGAATCGCCGTTGTTGCCGTCATGTCAAAGCCTCACCGGTGTCCTCACATTGCCACCACTGGTAACATTTGTGTTTACTGCCCTGGTGGTCCTGACTCGGATTTTGAATATAGTACTCAGTCTTATACAGGTTATGAACCTACCAGTATGCGCGCAATTCGAGCAAGGTATAATCCTTATGTTCAGACAAGAGGTAGGATAGATCAGCTTAAGCGATTAGGTCACAGTGTAGACAAGGTTGAGTTTATATTAATGGGTGGAACTTTCATGTCTCTTCCCGCGGATTATCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCGGGACACACCTCTGCCAATGTAGAAGAGGCGGTAACGTACTCTGAGCATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGACAGATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGTACCTATGAGGATGTTGCTCGTGACACTAATAGAGGACATACTGTTGCTGCGGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCCGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGAGAGTTTTTTGAAAGTCCAAAGTTTAGAGCAGATGGGCTTAAAATATACCCCACTCTTGTAATACGCGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAACGGTACCTCCTTGGACACGTGTTTATAGAGTTCAGCGGGATATTCCGATGCCTTTGGTTACTTCTGGGGTTGAGAAAGGGAATCTAAGGGAGCTAGCATTAGCTAGAATGGAAGATTTGGGATTAAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCATCACCAAATTAAGCCAGAAGAGGTTCAACTTGTTCGTCGTGATTATACAGCAAATGAAGGTTGGGAAACATTTCTGTCATATGAAGATACTCGGCAGGATATCCTCGTTGGTTTGTTGCGACTGCGAAAATGTGGCCGAAACACTACTTGTCCAGAGCTTATGGGAAAATGTTCTATTATTCGTGAGCTCCATGTTTACGGAACTGCTGTACCAGTTCACGGGCGGGATTCTGATAAGCTACAACACCAGGGTTATGGTACGCTTCTTATGGAGGAAGCTGAACGGATTGCTTGGAAAGAACACAGATCAACTAAGATAGGTGTGATTTCTGGGGTTGGCACACGCCATTACTACAGAAAATTGGGATATGAACTTGAAGGGCCTTACATGGTGAAACATTTATTGTAA 1692 0.4651 MAAAMVAEARKAPRPGKGGFEGHGLTEEEARVRAIAEIVNSMVDLSHKGHKVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREVLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQTRGRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPKFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILATVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVQLVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIIRELHVYGTAVPVHGRDSDKLQHQGYGTLLMEEAERIAWKEHRSTKIGVISGVGTRHYYRKLGYELEGPYMVKHLL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03358 563 PIRSF HAT_Elp3 21 563 IPR034687 -
Vifa3g03358 563 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 49 562 IPR034687 -
Vifa3g03358 563 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
Vifa3g03358 563 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 303 558 IPR016181 -
Vifa3g03358 563 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 21 562 IPR039661 -
Vifa3g03358 563 SFLD elongater protein-like 52 562 - -
Vifa3g03358 563 SFLD ELP3-like 52 562 IPR034687 -
Vifa3g03358 563 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Vifa3g03358 563 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 563 IPR000182 GO:0016747
Vifa3g03358 563 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Vifa3g03358 563 CDD Radical_SAM 112 359 - -
Vifa3g03358 563 SUPERFAMILY Radical SAM enzymes 135 374 - -
Vifa3g03358 563 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g03358 563 FunFam Elongator complex protein 3 411 563 - -
Vifa3g03358 563 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016747
Vifa3g03358 563 Gene3D - 414 562 - -
Vifa3g03358 563 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vifa3g03358 Radical_SAM 4.1e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03358 K07739 - gmx:100818764 1091.26