Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03351 ATGGAGACCCCCAAAGATGAACTTCAAGTAGTGGACCATTTGACCACACCACCAACAACAACTGGGACCAGTTTCTCTCAGTTACTATTAGCAGATGACGATGTTGTTGTTGATTGTGAAAATCAGAATCAGAATCATAACCCTAACCCATTGGTGGGTCTTCATCATGTGGACCAAACCTTTTCAACTTCTTCTCTTTTCTCTCTTCACAACACACCCAAAATGCTTTGTTTTGGTGGTAACTACCAAAATGAAATTGATATAACTCCTCAGAAATCTGTCATCACTTCCAGTGATTCTTCTTCTGCTTCTGCTTCTTCATGCAACCACACCAACAACACTGGTTTCAATAATGTCAATAATAATTTGCAGAAAAAGCGGAATGGGTCAGGAGGACAACAACAAGGGACCAGGGCAGGTGTTGGAGAGCAGAAAGGTCCTAAGAAGACCAAAGCAGACAACCCCACTTCAACTGGACATGCAAAGAAAAAAGAGAAACTCGGTGAACGAATTGCAGCGTTACAACAACTTGTTTCTCCCTTTGGCAAGACTGATACCGCTTCGGTGCTTCACGAGGCAACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGGGGACGGAGATAACAATGAAAGAGGAGAAGAAAACACACAAGTGAACAAAGACTTAACTAGCAGAGGTTTATGTTTGATCCCTGTTGGGTGCACCTTACACGTGGCAGGTAGTAACGGTGCTGATTTTTGGTCACCGGTAACAATAGACAACAATCTTGTTTCACCTTCAACTACTATTCCTAAGCAGTAG 807 0.4238 METPKDELQVVDHLTTPPTTTGTSFSQLLLADDDVVVDCENQNQNHNPNPLVGLHHVDQTFSTSSLFSLHNTPKMLCFGGNYQNEIDITPQKSVITSSDSSSASASSCNHTNNTGFNNVNNNLQKKRNGSGGQQQGTRAGVGEQKGPKKTKADNPTSTGHAKKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQGDGDNNERGEENTQVNKDLTSRGLCLIPVGCTLHVAGSNGADFWSPVTIDNNLVSPSTTIPKQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03351 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 213 IPR036638 GO:0046983
Vifa3g03351 268 CDD bHLH_AtbHLH_like 162 205 IPR045239 -
Vifa3g03351 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Vifa3g03351 268 MobiDBLite consensus disorder prediction 93 140 - -
Vifa3g03351 268 MobiDBLite consensus disorder prediction 93 166 - -
Vifa3g03351 268 MobiDBLite consensus disorder prediction 144 166 - -
Vifa3g03351 268 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 240 - -
Vifa3g03351 268 Gene3D - 161 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03351 Vifa-Chr3 959935757 959937224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03351 116 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 40.667 6.90e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03351 - - gmx:100809317 251.136