Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03350 ATGGAGACCCCCAAAGATGAACTTCAAGTAGTGGACCATTTGACCACACCACCAACAACAACTGGGACCAGTTTCTCTCAGTTACTATTAGCAGATGACGATGTTGTTGTTGATTGTGAAAATCAGAATCAGAATCATAACCCTAACCCATTGGTGGGTCTTCATCATGTGGACCAAACCTTTTCAACTTCTTCTCTTTTCTCTCTTCACAACACACCCAAAATGCTTTGTTTTGGTGGTAACTACCAAAATGAAATTGATATAACTCCTCAGAAATCTGTCATCACTTCCAGTGATTCTTCTTCTGCTTCTGCTTCTTCATGCAACCACACCAACAACACTGGTTTCAATAATGTCAATAATAATTTGCAGAAAAAGCGGAATGGGTCAGGAGGACAACAACAAGGGACCAGGGCAGGTGTTGGAGAGCAGAAAGGTCCTAAGAAGACCAAAGCAGACAACCCCACTTCAACTGGACATGCAAAGAAAAAAGAGAAACTCGGTGAACGAATTGCAGCGTTACAACAACTTGTTTCTCCCTTTGGCAAGACTGATACCGCTTCGGTGCTTCACGAGGCAACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGTTCTGTGCTCTCCATACCTCCAACCTTCACAAATTCAATTTCAAAATGGGGACGGAGATAACAATGAAAGAGGAGAAGAAAACACACAAGTGAACAAAGACTTAACTAGCAGAGGTTTATGTTTGATCCCTGTTGGGTGCACCTTACACGTGGCAGGTAGTAACGGTGCTGATTTTTGGTCACCGGTAACAATAGACAACAATCTTGTTTCACCTTCAACTACTATTCCTAAGCAGTAG 855 0.4211 METPKDELQVVDHLTTPPTTTGTSFSQLLLADDDVVVDCENQNQNHNPNPLVGLHHVDQTFSTSSLFSLHNTPKMLCFGGNYQNEIDITPQKSVITSSDSSSASASSCNHTNNTGFNNVNNNLQKKRNGSGGQQQGTRAGVGEQKGPKKTKADNPTSTGHAKKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQVLCSPYLQPSQIQFQNGDGDNNERGEENTQVNKDLTSRGLCLIPVGCTLHVAGSNGADFWSPVTIDNNLVSPSTTIPKQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03350 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Vifa3g03350 284 MobiDBLite consensus disorder prediction 93 140 - -
Vifa3g03350 284 FunFam Transcription factor bHLH113 144 214 - -
Vifa3g03350 284 MobiDBLite consensus disorder prediction 93 166 - -
Vifa3g03350 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 217 IPR036638 GO:0046983
Vifa3g03350 284 MobiDBLite consensus disorder prediction 144 166 - -
Vifa3g03350 284 Gene3D - 161 218 IPR036638 GO:0046983
Vifa3g03350 284 CDD bHLH_AtbHLH_like 162 207 IPR045239 -
Vifa3g03350 284 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03350 Vifa-Chr3 959935757 959937224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03350 116 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.871 5.30e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03350 - - gmx:100809317 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03350 3 959935757 959937224 Vifa3g03350 3 959935757 959937224 ECH