Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03345 ATGATCGAGGGAGATGAAACAACTCTTACAGCAGCAGCCAAGGACCAGCAAGGTGATCTGATGGACAGAGATAAGAACAGTGATGATGGAAGTGAACATGATGACGACCCCAAAGAGTGGTTAAACTTGAGCTTAGGAGGCACTTCACTCTCAACGGCTGAAGACCCTGATTCACAATCAAGACCAGCCAAAGTTTTTTCGTGCAACTTTTGCATGAGAAAGTTCTTTAGTTCACAAGCTTTAGGAGGTCATCAGAATGCTCACAAAAGGGAAAGAGGTGCAGCCAGAAGATATCAATCTCAGAGTCAGAGGACGATGGCACTAATGAGCTTGTCCATCAACAATCCAATGTTTCGATCACTTGGTGTCCAGGCTCATTCACTAGTGCATAAGCCTTGTAGAGGAGGAACTACGGTGGCCCCAAGCTTTCAAGAAGCATATGCAGCAGGGATCGGAATGGCATGTACACCTTTCACGTCTGAATATCATACTGATCAGGTGTGGCCAGGCAGCTTTCGTATGGTTTCACAACAGCCCCAACCACCACAGGAATCACTCAAGCTTGATTTAGACCTCAGACTTTGA 585 0.4615 MIEGDETTLTAAAKDQQGDLMDRDKNSDDGSEHDDDPKEWLNLSLGGTSLSTAEDPDSQSRPAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQSQRTMALMSLSINNPMFRSLGVQAHSLVHKPCRGGTTVAPSFQEAYAAGIGMACTPFTSEYHTDQVWPGSFRMVSQQPQPPQESLKLDLDLRL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03345 194 MobiDBLite consensus disorder prediction 44 62 - -
Vifa3g03345 194 PANTHER ZINC FINGER PROTEIN 4-LIKE 10 194 - -
Vifa3g03345 194 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vifa3g03345 194 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Vifa3g03345 194 Gene3D Classic Zinc Finger 49 115 - -
Vifa3g03345 194 MobiDBLite consensus disorder prediction 175 194 - -
Vifa3g03345 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Vifa3g03345 194 MobiDBLite consensus disorder prediction 1 62 - -
Vifa3g03345 194 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03345 Vifa-Chr3 958784277 958784861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03345 41 182 C2H2 Transcription Factor Family AT1G24625 38.255 1.67e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03345 - - gmx:100306296 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03345 3 958784277 958784861 Vifa3g03345 3 958784277 958784861 ECH