Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03343 ATGCTGAAAGATAACGGGATTCAGAAGGTGAAGTTGTTTGATGCTGATCTGAACATCTTAGACGCGCTTAAGAAATCTGGTATTCAGGTTATGGTGGGGATTCCTAATGACATGCTTTATACACTTGCTAATAGTGTTCAAGCTGCTGAAAATGGGTTTCCAAGAATGTTTCTGCTCATGTTTCTTCTGGAGGTGTTGACATCAGGCCAAAATATTATGTCCCTCATGCAAAAACATAGTAGGTGTGAGATGTGCATTTTGTCTGCATCTGGTTCCATCTCTAGTGCCACTCTTCGTCAGCCGGCAACCGCTGGAGGCAATATTACATATGAGGGTCGCTTTGACATTATTTCCCTGACTGGATCCTATGTCCGTAATGAACATGAAGGCCGTTCTGGTGGTCTTAGTGTATGCTTAGCTCATTCTGATGGGCAACTTGTAGGTGGAAGCATTGCCGGACCCATCAAACCGCAAGCACCGCCACTGTTAAACCGGACAACCCATCACCACCACCTATCATCTTTTGTTTCACCTTCACAACCAATTTCCACTCTACTTCACTGA 564 0.445 MLKDNGIQKVKLFDADLNILDALKKSGIQVMVGIPNDMLYTLANSVQAAENGFPRMFLLMFLLEVLTSGQNIMSLMQKHSRCEMCILSASGSISSATLRQPATAGGNITYEGRFDIISLTGSYVRNEHEGRSGGLSVCLAHSDGQLVGGSIAGPIKPQAPPLLNRTTHHHHLSSFVSPSQPISTLLH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03343 187 CDD DUF296 70 155 IPR005175 -
Vifa3g03343 187 Gene3D Glycosidases 1 58 - -
Vifa3g03343 187 Gene3D - 68 162 - -
Vifa3g03343 187 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 155 - -
Vifa3g03343 187 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 155 IPR039605 GO:0003680
Vifa3g03343 187 Pfam Plants and Prokaryotes Conserved (PCC) domain 70 155 IPR005175 -
Vifa3g03343 187 ProSiteProfiles PPC domain profile profile. 50 187 IPR005175 -
Vifa3g03343 187 SUPERFAMILY (Trans)glycosidases 2 52 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03343 Vifa-Chr3 958306128 958306886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03343 70 156 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 54.839 1.00e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03343 - - adu:107491998 135.576