Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa3g03340 | ATGGGAACTCAACAATGTGATTTGTCTGGAAAAAATGCTCAGATCGACTCTGAGTGTTTAGATAACGAACAGAGAGTACTTGGTGATGAGGTAACTGATTCTGTTATTGATGAAAAAACAGTTCAGGTTGGTTCTGAGGGTTTAGACAACGAACATAGAGTACTTGGTACTGATGAAACTGATTCTGTTATTGATGAAAAAACAGCTACGATCGGCTCTGAATGTTTAGACAACAAACAGAGAGTACTTGGTACTGTGGCAACCGATTCTGTTATTGATGAAAAATCAAATCAAGTTTTGGTGAATATGACTGAGAACTCTGTTATTCAATTGCCTGAACCCTCTGAACAAGTCCCTGTTTGCTTGTCTGATGATAAATCGGTAAACAAATGTCTTCAAAATAAACCTGGGGAAGCGAGTGATGCAGCAACTTCCCTTATTGAAGAACAAGCACAATCTGTTCCTGCTCAAGTGAACTCGAATACTGCCAATAAGCCATCGGATCCATCTTCTAGAGATGGTGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAACGAGTGATACAGTAACTTCACTTGTTGAAGAACAAACACAATCTGTTCCTGCTCAAGTGAACTCGGATTCTGCGAATAAGCCATCGGATCCACCTTCTGGAGATGGTGTGAAAGATATTAGTCTTCCAAGTGAGCCTTGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAATCCGTTCCTGCTCAAGTGAACTCGGATTTTGCGAATAAGCCATCAGATCCACCTTCTGGTGATGATGTGAAAGATACTAGTCTTCCAAATGAGCCTGGTGAAATGAGTGATGCACTAGCTTCCGTTGTTGTTGAAGAACAAAATCAACCCGTTCCTGCTCAAGTGAACTCAAATTCTGCAAATAAGCCATCAGATCCATCTTCTGGAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAACGAACAACACAGTAACCGGCCCTGTTGAAGACCACACACAATCTATTCCTGCTCAAGTGAATACAGATTCTTTGAACGAGCTACGGGATCCACCTTCTGGAGATGTTGCTAAAAATGTTAGCTCTGATTGTTCAGAAAGAAAGTCAAAAAGCTTAGCTCGTTCAAGATCGAGTCAAGGGGGTAAAAGTAACTCAAAACTACCGAAGAAGTATATATTGAGGTCGTTGAGAAACAGTGACAGGGCTCTGCGGTCAAGAGATAATAAACCTAAAGCTCCTGAACCAATTAATAATGTTGCTGAGGTTAACAATGATGAAACGAAGACAAAAAAAGAGAAGAAGAAAAAGAAAAAGGCAAGAAAAGAGGGAATTAATGATCAATTTTCTAGAATCAGAGCTCAATTGAGATATTATTTAAACCGAATGGGCTATGAACAGAGCTTGATCGATGCTTATTCTGGTGAGGGCTGGAAAGGAGGCAGTTTGGAAAAATTAAAGCCCGAGAAGGAGATTCAACGGGCTAAGTCTGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCTGAATCATTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTCTGTTCAAAATGCCAGACCAAAGTGTTGGGCACTAATAATGATATAATTCTTTGTGACGGCGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCGTTGTTAACCGAAGACATTCCACCAGGCGACGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATTGATATTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACTGACACTTGGGAGAGGGTTTTTCCCGAAGCAGCTACAGCGGCTGGAAGTATCTTGGATAACAACTTGGGACTTCCTTCAGACGATTCTGAGGATGATGATTATAATCCTAATGGTCCAGAGGATGTGGAGGTTGAAGCAGGTGAATCTAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGAGACGCAACATGAGAAATTGGAGGAGACGCAACATGAGGATCAATACATGGGTCTTCCTTCTGATGATTCAGAAGATGATGATTATGATCCCGAGGCTCCAATTCTTGATGGTAAAGCCACTGAAGAAAGTTCAAACTCTGATTTCTCATCTGCCTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCATTGAACAAGATGGTGATGTCACATCTTCATTGTTGGATAATGTTAAGAGGAAAGGTTCTAATAAACAAAATCGCAAGAAGCCATCTATAGCCGACGAACTGTCATCTTTAGTAGAGCCAGATCTTGGTGGAGAAGATTTGACTCCGGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACCAAAAGCTGTACGAAGAGGCATACCACAGTGAAACTAGTGAGGATGAAGATTGGGCTGCCACCGTTACTCCAAGTAGAAAAAAGAAACTAACTGGCAAAATTATTCCAGTGTCACCAAAAGGAAGTGCCTCAAATAATTCCAGACGTTCTGCTAAGAGGAACTCCCATCAGCATAAAGTTAAAAATACAAATAATTCACCCACCAAAACACTTGAAGGATGCACGGAATCTGGTTCCAGGGGTAAAAAGCGTGGATCTCCACACAAAAAACTTGGAGAAGCTGCTGTTCAGAGGCTTTACAAAACTTTCAAAGAAAATCAATATCCAGAACGAGCCACAAAAGAAAGCTTGGCGCAAGAAATTGGACTCACATTTAATCAGGTTGACAAATGGTTTGGAAATGCTCGATGGAGCTTCCGCCATTTACCACAAATGAAAGCAAGTCCAGGTAGTAATGCTTCGCAGCAGGTCACTGACAATGGAGCCGAAAATAAAGGAGAGAAGGAACTTGAATTAGTTTCCCAGGAGACTATGGGAGAAAAATCAAGAACCCCGACTTCTAAGAAAAGGAAGCAGCAGGCCACTGACAGCGGGGCTCAAAAGAAAGGAGAGATGAGTAATGCTTCACAGCACGTGACTGACAATGGAGCAAAAAATAAAGGAGAGAAGAAACCTGTATTAGTTTCCCAGAAGGGTATTGGAGAAAAATCAAGAACCCCGAATTCTAAGAAAAGGAAGAAGCAGGCCACAAAGAAAGGAGAGATGGGTAATGCTTCACAGCAAGTCACTGACAATAAAGGAGAGCAGGAATCTGGATTAGTTTCCCAGAAGAAGACTATTGGAGCAAAATCAAGAACCTCGAGTTCTAAGAAAAGGAAGCAGTTGTCTGAGCCGCAGGCATCTGAAGCAGGATTAGCTCCTAACGACCCAACCCCACCAAAAGTTGAAACAGGCAAGAAAACAAAGAAAAAGAAAGGGAAATGA | 3423 | 0.4148 | MGTQQCDLSGKNAQIDSECLDNEQRVLGDEVTDSVIDEKTVQVGSEGLDNEHRVLGTDETDSVIDEKTATIGSECLDNKQRVLGTVATDSVIDEKSNQVLVNMTENSVIQLPEPSEQVPVCLSDDKSVNKCLQNKPGEASDAATSLIEEQAQSVPAQVNSNTANKPSDPSSRDGVKDISLPNEPGETSDTVTSLVEEQTQSVPAQVNSDSANKPSDPPSGDGVKDISLPSEPCEMSDAVTSLVVEEQTQSVPAQVNSDFANKPSDPPSGDDVKDTSLPNEPGEMSDALASVVVEEQNQPVPAQVNSNSANKPSDPSSGDGVKDISLPNEPGETNNTVTGPVEDHTQSIPAQVNTDSLNELRDPPSGDVAKNVSSDCSERKSKSLARSRSSQGGKSNSKLPKKYILRSLRNSDRALRSRDNKPKAPEPINNVAEVNNDETKTKKEKKKKKKARKEGINDQFSRIRAQLRYYLNRMGYEQSLIDAYSGEGWKGGSLEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGKLPESLFDSEGEIDSEDIFCSKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIDIVNDLLGTSLSLTDTWERVFPEAATAAGSILDNNLGLPSDDSEDDDYNPNGPEDVEVEAGESSSDESEYASASEKLEETQHEKLEETQHEDQYMGLPSDDSEDDDYDPEAPILDGKATEESSNSDFSSASEDLAATIKDNMSIEQDGDVTSSLLDNVKRKGSNKQNRKKPSIADELSSLVEPDLGGEDLTPVSGKRNVERLDYQKLYEEAYHSETSEDEDWAATVTPSRKKKLTGKIIPVSPKGSASNNSRRSAKRNSHQHKVKNTNNSPTKTLEGCTESGSRGKKRGSPHKKLGEAAVQRLYKTFKENQYPERATKESLAQEIGLTFNQVDKWFGNARWSFRHLPQMKASPGSNASQQVTDNGAENKGEKELELVSQETMGEKSRTPTSKKRKQQATDSGAQKKGEMSNASQHVTDNGAKNKGEKKPVLVSQKGIGEKSRTPNSKKRKKQATKKGEMGNASQQVTDNKGEQESGLVSQKKTIGAKSRTSSSKKRKQLSEPQASEAGLAPNDPTPPKVETGKKTKKKKGK | 1140 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa3g03340 | 1140 | ProSitePatterns | Zinc finger PHD-type signature. | 551 | 602 | IPR019786 | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 958 | 974 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 753 | 769 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 1011 | 1028 | - | - | |
| Vifa3g03340 | 1140 | SUPERFAMILY | FYVE/PHD zinc finger | 540 | 608 | IPR011011 | - | |
| Vifa3g03340 | 1140 | ProSiteProfiles | 'Homeobox' domain profile. | 895 | 955 | IPR001356 | GO:0003677 | |
| Vifa3g03340 | 1140 | Coils | Coil | 434 | 454 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 183 | 215 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 975 | 1010 | - | - | |
| Vifa3g03340 | 1140 | FunFam | Homeobox protein HAT3.1 | 531 | 610 | - | - | |
| Vifa3g03340 | 1140 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 532 | 612 | IPR013083 | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 148 | 455 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 241 | 263 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 648 | 673 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 296 | 315 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 148 | 169 | - | - | |
| Vifa3g03340 | 1140 | SMART | HOX_1 | 893 | 959 | IPR001356 | GO:0003677 | |
| Vifa3g03340 | 1140 | SUPERFAMILY | Homeodomain-like | 893 | 956 | IPR009057 | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 873 | 888 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 641 | 906 | - | - | |
| Vifa3g03340 | 1140 | SMART | PHD_3 | 550 | 603 | IPR001965 | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 727 | 745 | - | - | |
| Vifa3g03340 | 1140 | Gene3D | - | 898 | 966 | - | - | |
| Vifa3g03340 | 1140 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 304 | 1106 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 1066 | 1096 | - | - | |
| Vifa3g03340 | 1140 | CDD | homeodomain | 906 | 954 | IPR001356 | GO:0003677 | |
| Vifa3g03340 | 1140 | Pfam | PHD-finger | 550 | 605 | IPR019787 | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 678 | 706 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 889 | 906 | - | - | |
| Vifa3g03340 | 1140 | Pfam | Homeodomain | 907 | 951 | IPR001356 | GO:0003677 | |
| Vifa3g03340 | 1140 | CDD | PHD_PRHA_like | 550 | 602 | IPR045876 | - | |
| Vifa3g03340 | 1140 | ProSiteProfiles | Zinc finger PHD-type profile. | 548 | 605 | IPR019787 | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 405 | 423 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 956 | 1140 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 803 | 836 | - | - | |
| Vifa3g03340 | 1140 | MobiDBLite | consensus disorder prediction | 328 | 360 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa3g03340 | Vifa-Chr3 | 957740052 | 957746609 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa3g03340 | 446 | 1006 | Homeobox Transcription Factor Family | AT3G19510 | 44.932 | 7.95e-130 | 411 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HB-PHD | Vifa3g03340 | PHD | 5.3e-10 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa3g03340 | - | - | psat:127097838 | 1573.14 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa3g03340 | 3 | 957740052 | 957746609 | Vifa3g03340 | 3 | 957740052 | 957746609 | ECH |