Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03322 ATGCTGCGTTTGTGCTTCAGCCCTCTCGATTATTGCTTCCGACGTCGTGGTGCCTCTGATTTTCTTCTCTGGCACACCGACTTGAAACCTCACGCTTCTGGTGATTTCTCCATAGCCGTTGCTCAGGCTAATTACTCCCTTGAGGATCAGAGTCAAGTCTTTACCTCCCCTTCCGCCACATACGTCGGTGTTTACGACGGTCATGGTGGTCCTGAAGCGTCCAGATTCGTCAATAATCGTCTATTCCCTTATTTGCACAAATTTGCATCTGAGCAAGGGGGATTATCGGTTGATGTGATAAAGAAGGCGTTTAGTGCTACTGAGGAGGATTTCTTGCATTTGGTTAAGTCGTCTTTGCCGCTTAGTCCTCAGATTGCGTCTGTGGGATCATGTTGTCTTCTTGGTGCAATTTCTAATAATGTGTTATATGTTGCCAACCTTGGAGACTCTAGAGTTGTTCTTGGCAGGAAGTATACTGAGAATAAGAGTGGTTCGGTAGAGGCCGTGCGCTTGTCGACGGATCATAATGTAGCGGATGAGGAGGTGAGGAGAGAAGTTGAAGCTTTACACCCGGATGATTCACATATTGTGGTTTATAGCCGTGGCGTTTGGAGGATTAAGGGCATCATTCAGGTGTCTAGATCTATTGGTGATGTTTATTTGAAGAGACCAGATTTCTACCGAGACCCCATTTTTCGGCAATTTGTAAATCCCATTCCTTTGAAGCGTCCAGTAATGACAGCTGAGCCATCAATCATTATTAGGGAGCTTGAGTCAGATGATTTATTCTTAATATTTGCATCAGATGGCCTTTGGGAACAATTAAGCGATGAAGCGGCGGTTGATCTTGTTTTCAAATATCCAAGAGCGGGAATTGCCAAGAGACTAGTAAGAGCTGCTCTCCAGGAAGCGGCAAAGAAAAGAGAGATGAGATATGCTGACATAAAGAAAATCGACAAAGGAATAAGAAGACACTTCCATGACGATATCACTGTTATTGTAATCTATCTTAATCAACAAGCAGGCGCTTCTAGTGGTGGATCTAAGCCAACTGCTGTTGGATATACAACTGCACCAGTTGATATATTTTCTCTAAATGCCGATGAGGCTGAGAAGAGTATGCTTGGTTCAGTTGCCTAG 1140 0.4421 MLRLCFSPLDYCFRRRGASDFLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNNRLFPYLHKFASEQGGLSVDVIKKAFSATEEDFLHLVKSSLPLSPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRKYTENKSGSVEAVRLSTDHNVADEEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFRQFVNPIPLKRPVMTAEPSIIIRELESDDLFLIFASDGLWEQLSDEAAVDLVFKYPRAGIAKRLVRAALQEAAKKREMRYADIKKIDKGIRRHFHDDITVIVIYLNQQAGASSGGSKPTAVGYTTAPVDIFSLNADEAEKSMLGSVA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03322 379 SMART PP2C_4 29 335 IPR001932 -
Vifa3g03322 379 Gene3D - 26 344 IPR036457 -
Vifa3g03322 379 PANTHER PROTEIN PHOSPHATASE 34 335 IPR015655 GO:0004722|GO:0006470
Vifa3g03322 379 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Vifa3g03322 379 FunFam Probable protein phosphatase 2C 42 26 345 - -
Vifa3g03322 379 Pfam Protein phosphatase 2C 56 306 IPR001932 -
Vifa3g03322 379 SUPERFAMILY PP2C-like 44 338 IPR036457 -
Vifa3g03322 379 CDD PP2Cc 48 337 IPR001932 -
Vifa3g03322 379 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03322 Vifa-Chr3 953776141 953778329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03322 17 347 PP2C-type Phosphatase Gene Family AT3G51370 56.342 2.54e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03322 - K01102 gmx:100812137 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03322 3 953776141 953778329 Vifa3g03322 3 953776141 953778329 ECH