Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03309 ATGGCTTTAGAGTTACGAACTATGAATTCTTCTCCAACCACAGAAGCTGCTGTTCCATTCCCAATCTTCAAAAACCAACAACAGAATCAAAAGAAGAATCTTGAGCAACAGAAACACGAGTCTCTCGTTAATAAGAAAAAACGATCAAAACGACCGCGGATTAGTAATCCACCCACCGAAGAAGAATACCTCGCTCTTTGTCTCATCATGCTCGCTCAAGGGAACACCAACAACACCAACGAGACTCTATCTCATCAACAAACTGAATCATCATCTTCACAATCACAACAACAACAGAATCAAACATCTCCACCGCCACCGCCACCGGTGAAGCTGAATCACAGGTGCACCGTCTGCAACAAAGCTTTTCCCTCTTATCAAGCACTTGGCGGCCACAAAGCCAGCCACCGAAAATCCTCGTTAGAAAACCAATCCACCACCGTCAACGACACCGCCACCGCCACCCTCTCAACCGTTTCCACCACCGGAAAGATGCACGAGTGCTCCATCTGTCACAAGAGTTTCCCTACCGGTCAAGCTCTCGGTGGACACAAACGGTGCCACTATGAAGGAGTTATCAACAATAACAACAACAACAATCACAGTAACAATCAAAATATCAGTACCAACAACGCCAACGCTAATAACAGCAGTAACATCACAATCTCTGACGTTACCGCCGCGTCCTCCTCCACCAGTCACCGCGGCTTTGACCTCAACCTTCCCGCGCCTCTCACTGAATTCTGGTCTCCGGTAGGATTCACCGCTGGTGATTCCAAGAAGACCAAACTTAACGTCAATCTCGCCGGAAATAATGAACAAGAGGTGGAAAGTCCGTTACCGGTAACCGCCAAACGTCCGCGTTTGTTTTCCGATGAAGACAATGATGAAACGGTGTAG 900 0.4756 MALELRTMNSSPTTEAAVPFPIFKNQQQNQKKNLEQQKHESLVNKKKRSKRPRISNPPTEEEYLALCLIMLAQGNTNNTNETLSHQQTESSSSQSQQQQNQTSPPPPPPVKLNHRCTVCNKAFPSYQALGGHKASHRKSSLENQSTTVNDTATATLSTVSTTGKMHECSICHKSFPTGQALGGHKRCHYEGVINNNNNNNHSNNQNISTNNANANNSSNITISDVTAASSSTSHRGFDLNLPAPLTEFWSPVGFTAGDSKKTKLNVNLAGNNEQEVESPLPVTAKRPRLFSDEDNDETV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03309 299 SUPERFAMILY beta-beta-alpha zinc fingers 114 188 IPR036236 -
Vifa3g03309 299 MobiDBLite consensus disorder prediction 1 59 - -
Vifa3g03309 299 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g03309 299 MobiDBLite consensus disorder prediction 78 100 - -
Vifa3g03309 299 Gene3D Classic Zinc Finger 111 188 - -
Vifa3g03309 299 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 243 IPR044653 GO:0003700
Vifa3g03309 299 MobiDBLite consensus disorder prediction 78 114 - -
Vifa3g03309 299 Coils Coil 24 44 - -
Vifa3g03309 299 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Vifa3g03309 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 188 IPR013087 -
Vifa3g03309 299 SMART c2h2final6 166 188 IPR013087 -
Vifa3g03309 299 SMART c2h2final6 114 136 IPR013087 -
Vifa3g03309 299 Pfam C2H2-type zinc finger 166 189 - -
Vifa3g03309 299 Pfam C2H2-type zinc finger 114 138 - -
Vifa3g03309 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Vifa3g03309 299 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Vifa3g03309 299 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03309 Vifa-Chr3 949532208 949533107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03309 59 294 C2H2 Transcription Factor Family AT3G19580 41.393 7.37e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g03309 zf-C2H2_6 3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03309 - - psat:127091014 422.935