Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03300 ATGGAACCTACCCAATTGATTTCTCAAGAGTGGGATTCTCTTAGTGGACAGTACACAGCTGAAGAAGCTGATTTCATGACTCAGTTCCTTGGTGCCAATACCAACTATTCATGTTTTCCTTCAAATGTTGCAAATGCTAGTCATAATTTTATGTGTTTCTCCCAAGGGAGTAGTATCTCAAGCACTGATTATAGGGATAACATCTTTTCTACCATCACACCAACTAATGGACCTTACTTCTGTCATCCGGCAACAGACATTGATTCATTCTCCATGTTTCTTAGTCCACAATATTTGGATGATTACTTAATCAAACAGATAAGCTATCAAGGCACTGATCATGAAAGGTCATGTTTAGAGCCATTGAAACTGGCTCATTCTCCTGACAATAGCTTCCAAGCTAAGAGGGAGCATGAAATGATGATGCTTGTTTCTGAACCTTCTTCAGAAGAGGATAGAATCAAAAGATTTAGAAGCTCAAATGCTTCCATGGAGCTAAGTGAGGGAACATGTCCAAAAGAACCTCAAGTGTCGAATTCATTATGTAGAAAATCAAGAGCAAGAAAAGTTGCTGCCACTGATTCTCAAAGCATTTATGCTAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTAAGAATGTTGCAAACACTTGTCCCAAATGGAACTAAGGTGGACATTAGCACCATGCTTGAGGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTTCTAAGCTCTGATGATATGTGGATGTATGCTCCATTAGCTTACAATGGAATCAACATTGGATTGGACCTCACCTTTTCATAG 819 0.3858 MEPTQLISQEWDSLSGQYTAEEADFMTQFLGANTNYSCFPSNVANASHNFMCFSQGSSISSTDYRDNIFSTITPTNGPYFCHPATDIDSFSMFLSPQYLDDYLIKQISYQGTDHERSCLEPLKLAHSPDNSFQAKREHEMMMLVSEPSSEEDRIKRFRSSNASMELSEGTCPKEPQVSNSLCRKSRARKVAATDSQSIYARRRRERINERLRMLQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPLAYNGINIGLDLTFS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03300 272 Gene3D - 185 249 IPR036638 GO:0046983
Vifa3g03300 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Vifa3g03300 272 FunFam Basic helix-loop-helix transcription factor 192 249 - -
Vifa3g03300 272 SMART finulus 197 246 IPR011598 GO:0046983
Vifa3g03300 272 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 263 - -
Vifa3g03300 272 Pfam Helix-loop-helix DNA-binding domain 201 241 IPR011598 GO:0046983
Vifa3g03300 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 256 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03300 Vifa-Chr3 947755249 947756249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03300 174 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 74.468 5.02e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g03300 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03300 - - psat:127092927 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04050 1 621857845 621859402 Vifa3g03300 3 947755249 947756249 PCT