Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03299 ATGGAACCTACCCAATTGATTTCTCAAGAGTGGGATTCTCTTAGTGGACAGTACACAGCTGAAGAAGCTGATTTCATGACTCAGTTCCTTGGTGCCAATACCAACTATTCATGTTTTCCTTCAAATGTTGCAAATGCTAGTCATAACTTTATGTGTTTCTCCCAAGGGAGTAGTAGCTCAAGCACTGATTATAGGGATCACATCTTTTCTACCATCACACCAACTAATGGACCTTACTTCTGTCATCCGGCAACAGACATTGATTCATTCTCCATGTTTCTTAGTCCACAATATTTGGATGATTACTTAATCAAACAGATAAGCTATGAAGGCACTGATCATGAAAGGTCATGTTTAGAGCCATTGAAACTGCCTCATTCTCCTCACAATAGCTTCCAAGCTAAGAGGGAGCATGAAATGATGATGCTTGTTTCTGAACCTTCTTCAGAAGAGGATAGAATCAAAAGATTTAGAAGCTCAAATGCTTCCATGGAGCTAAGTGAGGGAACATGTCCAAAAGAACCTCAAGTGTCGAATTCATTATGTAGAAAATCAAGAGCAGGAAAAGTTGCTGCCACTGATTCTCAAAGCATTTATGCTAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTAAGAATGTTGCAAACACTTGTCCCAAATGGAACTAAGGTGGACATTAGCACCATGCTTGAGGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTTCTAAGCTCTGATGATATGTGGATGTATGCTCCATTAGCTTACAATGGAATCAACATTGGATTGGACCTCAACTTTTCTTCTCCAACTGACTAA 831 0.3899 MEPTQLISQEWDSLSGQYTAEEADFMTQFLGANTNYSCFPSNVANASHNFMCFSQGSSSSSTDYRDHIFSTITPTNGPYFCHPATDIDSFSMFLSPQYLDDYLIKQISYEGTDHERSCLEPLKLPHSPHNSFQAKREHEMMMLVSEPSSEEDRIKRFRSSNASMELSEGTCPKEPQVSNSLCRKSRAGKVAATDSQSIYARRRRERINERLRMLQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPLAYNGINIGLDLNFSSPTD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03299 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Vifa3g03299 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 256 IPR036638 GO:0046983
Vifa3g03299 276 Pfam Helix-loop-helix DNA-binding domain 201 241 IPR011598 GO:0046983
Vifa3g03299 276 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 263 - -
Vifa3g03299 276 SMART finulus 197 246 IPR011598 GO:0046983
Vifa3g03299 276 FunFam Basic helix-loop-helix transcription factor 192 249 - -
Vifa3g03299 276 Gene3D - 190 249 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03299 Vifa-Chr3 947726408 947727418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03299 174 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 74.468 5.97e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g03299 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03299 - - psat:127092927 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03299 3 947726408 947727418 Vifa3g03299 3 947726408 947727418 ECH