Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03298 ATGGATCCTTCTGAGCAAAGTTGTGAAGAATGGAGTTCACTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGCCAGTTACTTGATAACTGTCAAGTCCCTGACCACCATTATGGAAACTTCAATTTGGAAGTTCCATCTACACTATGGCCTGGACATGACTCAACAATAGTGAGCATGCATAACAGTCACCATTTTCCTCAAAATGTTAACATTGATTTTTCAAGTTTTTTGCAAGGAAGTAACACAATTTCTGATACTAATGGTGGTTACAACTGTTTGAATGATGATCAAGTAGCAAACGTTGGCTACATATCCATGATGGATGGCGATTTCGGCGCTTGTAGAGTTCAAAGGAATGATAGTGCACAGTTAACTGAAAACAACACTGATGAAGAGTTTTGTCAAGAGGTTATTTGTGACAAGAATTTTCAGGCTCCCATGGAATGTGAAGAGGTACTAGTTTCTGAATCACTGGAAGAGGGTGTTAATATCAACATGGAAAAAACAGGAAAAAGATCTAGAAGCTCAATGAAGGTACAAAAGAATAAGAAAAATATCAAACCTAGAAAGAAATCAAAGTCTATAAGCAACACTGAAGAGGATGAAAGTCCTGATCTTCAGGAGCAGATTTTGAGCTCGGAGGAGGATGACTTCAATGCTTCTCAGAAGCTAAATGAAGATGGGTCTTCAATCGTAAACCGGGACGATTCAGTGTTGGTGAAGGTAAAAGGAAAATCAAGATGTGATAGAGGTTCTAGCACTGATCTCCAAGGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAGTCTAGTCCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTGCAGGTCCAAATTAAGCTTTTGAGCTCTGATGATCACTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGACTAAACCTCAACATTACACCACCGAAATTACCATAG 1026 0.3869 MDPSEQSCEEWSSLSGFYTAEEADFMGQLLDNCQVPDHHYGNFNLEVPSTLWPGHDSTIVSMHNSHHFPQNVNIDFSSFLQGSNTISDTNGGYNCLNDDQVANVGYISMMDGDFGACRVQRNDSAQLTENNTDEEFCQEVICDKNFQAPMECEEVLVSESLEEGVNINMEKTGKRSRSSMKVQKNKKNIKPRKKSKSISNTEEDESPDLQEQILSSEEDDFNASQKLNEDGSSIVNRDDSVLVKVKGKSRCDRGSSTDLQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLNITPPKLP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03298 341 SMART finulus 261 310 IPR011598 GO:0046983
Vifa3g03298 341 MobiDBLite consensus disorder prediction 167 210 - -
Vifa3g03298 341 Gene3D - 263 316 IPR036638 GO:0046983
Vifa3g03298 341 MobiDBLite consensus disorder prediction 178 194 - -
Vifa3g03298 341 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 118 313 IPR045843 GO:0003700|GO:0006355
Vifa3g03298 341 FunFam Basic helix-loop-helix transcription factor 256 313 - -
Vifa3g03298 341 CDD bHLH_AtIND_like 256 318 - -
Vifa3g03298 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
Vifa3g03298 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 321 IPR036638 GO:0046983
Vifa3g03298 341 Pfam Helix-loop-helix DNA-binding domain 265 305 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03298 Vifa-Chr3 946823453 946825085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03298 10 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 36.612 3.53e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g03298 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03298 - - tpra:123881885 459.144